Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05335 ATGCAATCCCTCAACTCCCTCTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAACGACGCATTTCACAACGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACACTTGACCCTAACAACCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTCACTTTCCCTAATTACGACGAACATCACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTTCACATGCCTGCTGACTTTGACTCCTCTCAAAACGATGTCGTTAACGCTTCCTCCGCTGGTGACGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTCCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGAGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTAGTTGCTGATATGTCCTCCGAGGGTGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGACCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAAAGCCTCACAATGACAGAGCATCAGGTGGCAAAGCTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACTAGGAACCCTTTGAGCAATGCTGCTACCAATAACAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGATGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATTGTTAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1203 0.4946 MQSLNSLFNSSSSEIPIPLQQNHSQIQINNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEHHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPADFDSSQNDVVNASSAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGTHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLSNAATNNNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05335 400 MobiDBLite consensus disorder prediction 157 184 - -
Trre16g05335 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Trre16g05335 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 342 - -
Trre16g05335 400 Gene3D - 195 262 IPR036638 GO:0046983
Trre16g05335 400 MobiDBLite consensus disorder prediction 284 303 - -
Trre16g05335 400 FunFam Transcription factor bHLH66 195 260 - -
Trre16g05335 400 MobiDBLite consensus disorder prediction 357 400 - -
Trre16g05335 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 258 IPR036638 GO:0046983
Trre16g05335 400 Pfam Helix-loop-helix DNA-binding domain 203 248 IPR011598 GO:0046983
Trre16g05335 400 SMART finulus 204 253 IPR011598 GO:0046983
Trre16g05335 400 MobiDBLite consensus disorder prediction 157 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05335 Trre-Chr16 56376399 56379546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05335 184 353 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 76.023 7.85e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g05335 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05335 - - psat:127138414 605.134