Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05334 ATGCAGCCTTGCAGCAGAGAAATGCAATCCCTCAACTCCCTCTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAACGACGCATTTCACAACGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACACTTGACCCTAACAACCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTCACTTTCCCTAATTACGACGAACATCACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTTCACATGCCTGCTGACTTTGACTCCTCTCAAAACGATGTCGTTAACGCTTCCTCCCTTTTACAGGCTGGTGACGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTCCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGAGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTAGTTGCTGATATGTCCTCCGAGGGTGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGACCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAAAGCCTCACAATGACAGAGCATCAGGTGGCAAAGCTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACTAGGAACCCTTTGAGCAATGCTGCTACCAATAACAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGATGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATTGTTAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1233 0.4939 MQPCSREMQSLNSLFNSSSSEIPIPLQQNHSQIQINNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEHHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPADFDSSQNDVVNASSLLQAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGTHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLSNAATNNNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05334 410 MobiDBLite consensus disorder prediction 167 216 - -
Trre16g05334 410 MobiDBLite consensus disorder prediction 167 194 - -
Trre16g05334 410 Pfam Helix-loop-helix DNA-binding domain 213 258 IPR011598 GO:0046983
Trre16g05334 410 SMART finulus 214 263 IPR011598 GO:0046983
Trre16g05334 410 MobiDBLite consensus disorder prediction 294 313 - -
Trre16g05334 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 55 352 - -
Trre16g05334 410 Gene3D - 205 272 IPR036638 GO:0046983
Trre16g05334 410 FunFam Transcription factor bHLH66 205 270 - -
Trre16g05334 410 MobiDBLite consensus disorder prediction 367 410 - -
Trre16g05334 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 268 IPR036638 GO:0046983
Trre16g05334 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 257 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05334 Trre-Chr16 56376399 56379567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05334 194 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.232 1.34e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g05334 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05334 - - psat:127138414 630.943