Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05333 ATGCAGCCTTGCAGCAGAGAAATGCAATCCCTCAACTCCCTCTTCAACTCTTCTTCTTCCGAAATTCCCATTCCTCTCCAACAAAATCACTCACAGATCCAAATCAACAACAACGACGCATTTCACAACGACGATTTCCTCAAACAAATGCTCTCCAATCTCCCTCCATCCTCTCCATGGACACTTGACCCTAACAACCCTAAACCCTTATGGGACCCTAATTCCGACGAAAATGTCACTTTCCCTAATTACGACGAACATCACAACAACCTTTCCTCCAAATTTCGTAACCACCAGATCACTGACAAGTCCGCCGCCGCTCTCATGCTTCTCATGCCTACTGCCGCCGATTCCGGACTTCTTCACATGCCTGCTGACTTTGACTCCTCTCAAAACGATGTCGTTAACGCTTCCTCCGCTGGTGACGCTTCCGTTCAAGCTCTCTTTAACGGTTTTTCCGGATCTCTCCACGGTGTCGCCGCCAATCAAACTCACCATTTTCAACCTCCTCAGGGGCAGAGTTTTGGAGGTGGTTCAGTGAGTGCAACGAACCAGGCTCCGGCGAGCGGTGCTCCGGCTCAGCCGAGGCAGAAAGTCAGGGCTAGAAGAGGTCAAGCAACCGACCCACACAGCATTGCTGAGAGGTTGCGGAGAGAAAGAATTGCTGAGAGAATGAAAGCATTGCAGGAACTTGTTCCTAATGCCAACAAGACAGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGGTTCAAGTCAAGGTTTTGAGTATGAGCAGATTAGGTGGAGCAGCAGCTGTAGCTCCCCTAGTTGCTGATATGTCCTCCGAGGGTGTAAGTGACTGCGTCCAAGCCAACGGCAACGGTGGGACCCACCCAAGAAACCCCAAAACGGCGTCGTCTACAAACGAAAGCCTCACAATGACAGAGCATCAGGTGGCAAAGCTGATGGAAGAAGACATGGGATCCGCCATGCAATACTTGCAAGGCAAAGGTCTCTGCCTCATGCCTATTTCTCTTGCAACTGCAATCTCTACAGCCACGTGTCACACTAGGAACCCTTTGAGCAATGCTGCTACCAATAACAATAACAATGTCAACAACGGTAATGGGAACCATGTCGTTGCATCTAACGGTGATGGGCCATCCTCTCCCGGAATGTCCGTTAATAGCATTGTTAAAGATGCTAACTCTGCTTCTAAGTCGTAG 1224 0.4951 MQPCSREMQSLNSLFNSSSSEIPIPLQQNHSQIQINNNDAFHNDDFLKQMLSNLPPSSPWTLDPNNPKPLWDPNSDENVTFPNYDEHHNNLSSKFRNHQITDKSAAALMLLMPTAADSGLLHMPADFDSSQNDVVNASSAGDASVQALFNGFSGSLHGVAANQTHHFQPPQGQSFGGGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAAAVAPLVADMSSEGVSDCVQANGNGGTHPRNPKTASSTNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLSNAATNNNNNVNNGNGNHVVASNGDGPSSPGMSVNSIVKDANSASKS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05333 407 MobiDBLite consensus disorder prediction 364 407 - -
Trre16g05333 407 Pfam Helix-loop-helix DNA-binding domain 210 255 IPR011598 GO:0046983
Trre16g05333 407 MobiDBLite consensus disorder prediction 164 212 - -
Trre16g05333 407 MobiDBLite consensus disorder prediction 164 191 - -
Trre16g05333 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 205 254 IPR011598 GO:0046983
Trre16g05333 407 SMART finulus 211 260 IPR011598 GO:0046983
Trre16g05333 407 Gene3D - 202 269 IPR036638 GO:0046983
Trre16g05333 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 349 - -
Trre16g05333 407 MobiDBLite consensus disorder prediction 291 310 - -
Trre16g05333 407 FunFam Transcription factor bHLH66 202 267 - -
Trre16g05333 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 265 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05333 Trre-Chr16 56376399 56379567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05333 191 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 62.232 1.11e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g05333 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05333 - - psat:127138414 620.542