Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05330 ATGAGTGAGAAGGAAAGTCCTAATTCTCACTCGGCTCTGCTCAATGGAAAATACGAGCTGGGTCGAGTTCTCGGTCATGGAACATTCGCGAAGGTCTATCATGCGAAGAATCTTCATACTGGAAAAAACGTAGCCATGAAAGTCGTTGGAAAAGAAAAGGTTATCAAAGTTGGAATGATGGAACAGATCAAAAGAGAGATCTCCGTCATGAAAATGGTGAAACACTCAAACATCGTTCAAATCCATGAAGTCATGGCTTCAAAATCAAAGATCTACATCGCCATGGAACTCGTTCGCGGTGGAGAGCTTTTCAACAAAATCGTCAAAGGTCGTCTTAAAGAAGATGTTGCTAGAGTCTATTTCCAGCAATTAATCTCAGCCGTTGATTTCTGTCACAGTCGCGGTGTTTACCACCGTGATCTGAAACCGGAGAATCTTCTTCTCGACGAAGACGGTAATCTTAAGGTGTCTGATTTTGGTCTCAGCACTTTCGGTGAACATATGAGACAAGATGGATTGTTGCATACGACGTGTGGTACTCCGGCGTATGTTTCGCCGGAGGTAATCGCGAAGAAAGGCTACGACGGTGCTAAGGCGGATATTTGGTCTTGTGGTGTAATTCTCTACGTTCTTCTCGCCGGATTTTTACCTTTTCAGGATGATAATGTTGTTAATATGTATAAGAAAATTTACAGAGGCGATTTCAAATGTCCACCGTGGTTTTCTCTTGAAGCTAGGAGGCTTATCACGAAGCTTCTAGATCCGAATCCGAATACAAGAATTACTATATCGAAGATAATGGATTCTTCTTGGTTTAAGAAACCGGTTCCGAAGAGCGTGGCGAGGAAGAAGAAGGAGAAAGAAGAGGAAGAAGAAGAAAAGGGATTTGGCTTCTTGGAGAACGAGAAATCGTCGATGACGCCTACGACAATGAATGCTTTTCATATAATAGGGTTATCTCAAGGGTTTGATTTGTCACCTTTGTTTGAGGAGAAGAAGAGAGAAGAGAGGGAGGAGGTGAGGTTCGCCACGGCTGGGACACCGAGCAGAGTGATATCAAAATTGGAGCAAGTGGCGAAAGCGGTGAAGTTTGATGTGAAGAGTAGTGATACGAAGGTGAGGCTGCAGGGGCAGGAGAGAGGGAGAAAGGGTAAATTAGGTATTGCGGCGGATATTTACGCGGTGACGCCGTCGTTTATGGTGGTGGAGGTGAAGAAAGATAGAGGTGATACTTTGGAGTATAATGAATTTTGGAGTAAAGAACTTCGTCCTGCTCTTAAAGATATTTTCTGGAAATCTGCTGATCCTCCAGCTGCTTGA 1320 0.4379 MSEKESPNSHSALLNGKYELGRVLGHGTFAKVYHAKNLHTGKNVAMKVVGKEKVIKVGMMEQIKREISVMKMVKHSNIVQIHEVMASKSKIYIAMELVRGGELFNKIVKGRLKEDVARVYFQQLISAVDFCHSRGVYHRDLKPENLLLDEDGNLKVSDFGLSTFGEHMRQDGLLHTTCGTPAYVSPEVIAKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNVVNMYKKIYRGDFKCPPWFSLEARRLITKLLDPNPNTRITISKIMDSSWFKKPVPKSVARKKKEKEEEEEEKGFGFLENEKSSMTPTTMNAFHIIGLSQGFDLSPLFEEKKREEREEVRFATAGTPSRVISKLEQVAKAVKFDVKSSDTKVRLQGQERGRKGKLGIAADIYAVTPSFMVVEVKKDRGDTLEYNEFWSKELRPALKDIFWKSADPPAA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05330 439 CDD STKc_SnRK3 17 271 - -
Trre16g05330 439 Gene3D Transferase(Phosphotransferase) domain 1 105 309 - -
Trre16g05330 439 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Trre16g05330 439 FunFam Non-specific serine/threonine protein kinase 306 431 - -
Trre16g05330 439 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05330 439 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05330 439 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Trre16g05330 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 428 - -
Trre16g05330 439 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05330 439 FunFam Non-specific serine/threonine protein kinase 8 296 - -
Trre16g05330 439 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Trre16g05330 439 Pfam NAF domain 308 367 IPR004041 GO:0007165
Trre16g05330 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Trre16g05330 439 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Trre16g05330 439 Gene3D Phosphorylase Kinase; domain 1 12 104 - -
Trre16g05330 439 CDD CIPK_C 312 427 - -
Trre16g05330 439 Gene3D Kinase associated domain 1, KA1 310 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05330 Trre-Chr16 56342614 56343933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05330 9 433 CBL-interacting serine-threonine protein kinases AT4G30960 73.256 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre16g05330 Pkinase 2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05330 - K07198 gmx:100781111 694.886