Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05322 ATGAATGTAGTTTTTGATTGCTGTTTCACAACGGAAGCTTGGAATGAAGAGAAGTATAAAGTTTATGTGGATGGTATAGTAGGTCAGCTTAGAGAGAATGTGCCTGATGCTTCTCTTATGGTTTTCAATTTTCGCGAGGAAGAGACGAAAAGTTTGATGGCAAACGTAATGTCTGAGTATGACATTACTATAATGGACTATCCTAAGCACTATGAAGGTTGTCCTGTGCTTAAAATGGAGCTCATTCACCACTTTTTAAGGTCTAGTGAAAGCTGGCTCTCACTTGGTCAACACAATGTGTTGTTGATGCATTGTGAACGTGGTGCTTGGCCGATTTTGGCTTTTATGTTGGCTGCATTGTTGATTTATCGGAAGGTTTATACTGGGGAGCATAGGACTTTGGATATGGTTTATCGGCAGTCCCCCCACGAGCTTTTGCATTTGTTGACTCCGTTGAATCCACTCCCTTCACAATTGAGGTATCTGCAGTATATTTCCAGGAGGAATGTGGCCATAGATTGGCCTCCCCTTGACAGGGCACTCATGTTAGACTGTATCATTCTCAGATTCTTCCCAAACTTTGATGGGAAAGGTGGTTGTCATCCCTTGTTTAGAATTTACGGACAGGATCCTTTTAGTGCAGATAAAAGTCCTAAAATGTTGTATTCAATGCCAAAGAAAAGCAAAAATATCCGGGCTTACAAGCAGGGAGAGTGCGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGGGTATTAACTTGAATGATGATATGGAGCACGAGATGATGATGTTCCGAGTAATGTTCAACACAGCTTTTGTTAGATCCAATATTCTGATGCTTAATCGCGATGAAATTGATGTTCTATGGGATGCTAAAGATCACTTTCCAAAAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCAGATGGTACATCATGGTTTGAGGAGAAAGAGGGACTTCCGATTGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGAACCCAAAGGCTGATGCTGCACTAAATGTGCTCCAACATATAAATACTTCTGGTATCATGAATGACACGCTGGATAAAGTTTCTGACCAGCACGTGGAAACTGGCACTTCATTGCATGAAATAGGTCCTAAAACACCTCAGAGAAATTCATATGAAGCAATACAGTCTTTGTCCTCAGCTAAGCATTCCCCAAATAATGATATACGTGGAAAAGAGGACAAGACAAACAAACTAGCCAGTAAATGTCCAACAGGGTCAAAAAATATTGATATGAAACTGGAGGTATCCAATCCTGCTTCATCTGGTTCTCCAGATTCTTCTCTTACCCCTGGAACACCTCCTCTGCGGCCTCCCTCAACTACTAGTGCTAAAGAAGTTCATGACTCTCCTCCCCACACAGAATCACCTCCTCATCATATTTTTCCTTTGAAATCAGAACATCAACCACAAGACAGCAGTTATTCACCTATTTCTAGCCCGACACCTGGTACCCATCCTTCACTTTCAGCAGTTTCTTCAATTCAGCCATCCCCTCCACTTTCTTCCAAAACACCTTTGAATGACATTCCACCTGTCAAAACAAGACTCGAGTCTCCCCCTTCACAACCTCCAACTCCACCTCCTCCCACCCCTCCATTAAAAGATCAGAAAGTAGTTAGAGCTGGACCCCCATCCCCACCACCTCCTCCAAAGAAGGAACTACATGTTAAAGCTGGACCTCCGCCTCCTGTTCCATCTCATATGAATGAGAAGCCACATGTTAGAGATGGACATTCTCCTCCTCCTCCTCCCCCTCCTCCTCTAAACTCGGAGCAACCTTCTAGGTTTAAGCCCCCGCCGCCGCCGCCACCACCTCATCTTTCAACGGGAGCTGCAAGTTCTACTATAGCACCGCCTGCACCACCTCCACCTGCAACACTTTCCTCTGGTAACCCTAATGCTTCGATGCAAACGTCTCCACCTGTTCCGCCACCTCCAATTCCTTTAGGCAAAGAAGGACTAAAACCAGGCAGTGCTTTTCCAATGTCTCTTAAGGTCCCAGGCACAGCAGGACCTCAATCTAAGGGACGAGTTCTACCATGTACAATTGGCTCAAAGAATAACGCCAAAAAGTTGAAGCCATTGCATTGGATGAAGCTATCTAGAGCAGTGCAAGGAAGTTTGTGGGACGAGACACAAAAATCTGGTGAAGCTTCCAAAGCCCCAGAGATTGATATCTCGGAGCTCGAGCGTCTCTTCTCAGCAGCAGCCCCAAGTTCAGGCCCTGCCAAGAAGTCAAATGTCCAAAGCTCAGCTAAGCCTAAATCTGAGAAAGTGCAACTGATTGATCATAGGCGAGCATATAATTGTGAAATCATGCTTTCACAAGTGAAGGTGCCATTACATGATTTAATGACCTCAGTGCTAGAACTAGAAGAGTCAGCGCTAGACACCGATCAAGTTGAGAACCTCATAAAGTTTTGTCCTACAAAAGAGGAGATGGAGATAATCAAGAGTTATAATGGGGAAAAGGAGAAATTAGGGAGATGTGAACAGTTCTTCATGGAATTGATGAAAGTACCACGGGTAGAATCTAAGCTCAGGGTCTTTTCGTTCAAGATTCAGTTCCATTCTCAGGTTTCTGATCTTAAAAATAGCCTAAATGTTGTGAATTCTGCTGCAGAAGAGATCAGGAATTCTGTCAAATTGAAGAGAATTATGCAAACAATACTTACTCTAGGAAATGCTTTGAATCAAGGAACTGCCAGGGGTTCGGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTCACGGATACACGTGCACGGAACAACAAAATGACTCTCATGCATTATCTTTGTAAGGTTTTGGATGACAAATTACCAGAAGTTTTAGACTTCTCTAAGGATCTTGCTAACCTAGAGGCAGCAGCAAAGATCCAATTGAAGTTTCTGGCGGAGGAGATGCAAGCTATAAACAAAGGGTTAGAGAAAGTTGTACAGGAATTATCCACTTCTGAAAATGATGGTCCTATATCAGAAACATTCCGCAAGAAATTGAAAGCGTTCCTCTGTTCTGCTGAAGCTGAAGTCCGATCATTGGCTTCACTATATTCTGCTGTGGGCAGGAACGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCTCGCTGTCCATTTGAGCAAGTTGTCACAACTTTGCTCAACTTCACTGGAATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGAAAGTGAGAAAAAGAAATGTGAATCTGAAAGGATATTACCTACAGCAATCCGGACTGGCAATGTCAAATAA 3396 0.4296 MNVVFDCCFTTEAWNEEKYKVYVDGIVGQLRENVPDASLMVFNFREEETKSLMANVMSEYDITIMDYPKHYEGCPVLKMELIHHFLRSSESWLSLGQHNVLLMHCERGAWPILAFMLAALLIYRKVYTGEHRTLDMVYRQSPHELLHLLTPLNPLPSQLRYLQYISRRNVAIDWPPLDRALMLDCIILRFFPNFDGKGGCHPLFRIYGQDPFSADKSPKMLYSMPKKSKNIRAYKQGECELIKIDINCHIQGDVVIEGINLNDDMEHEMMMFRVMFNTAFVRSNILMLNRDEIDVLWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSWFEEKEGLPIEAFAKVQEIFSHVDWMNPKADAALNVLQHINTSGIMNDTLDKVSDQHVETGTSLHEIGPKTPQRNSYEAIQSLSSAKHSPNNDIRGKEDKTNKLASKCPTGSKNIDMKLEVSNPASSGSPDSSLTPGTPPLRPPSTTSAKEVHDSPPHTESPPHHIFPLKSEHQPQDSSYSPISSPTPGTHPSLSAVSSIQPSPPLSSKTPLNDIPPVKTRLESPPSQPPTPPPPTPPLKDQKVVRAGPPSPPPPPKKELHVKAGPPPPVPSHMNEKPHVRDGHSPPPPPPPPLNSEQPSRFKPPPPPPPPHLSTGAASSTIAPPAPPPPATLSSGNPNASMQTSPPVPPPPIPLGKEGLKPGSAFPMSLKVPGTAGPQSKGRVLPCTIGSKNNAKKLKPLHWMKLSRAVQGSLWDETQKSGEASKAPEIDISELERLFSAAAPSSGPAKKSNVQSSAKPKSEKVQLIDHRRAYNCEIMLSQVKVPLHDLMTSVLELEESALDTDQVENLIKFCPTKEEMEIIKSYNGEKEKLGRCEQFFMELMKVPRVESKLRVFSFKIQFHSQVSDLKNSLNVVNSAAEEIRNSVKLKRIMQTILTLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLDDKLPEVLDFSKDLANLEAAAKIQLKFLAEEMQAINKGLEKVVQELSTSENDGPISETFRKKLKAFLCSAEAEVRSLASLYSAVGRNVDALILYFGEDPSRCPFEQVVTTLLNFTGMFNKAHEENCKQLELEMKKTAESEKKKCESERILPTAIRTGNVK 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05322 1131 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 37 166 IPR029021 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 500 536 - -
Trre16g05322 1131 SMART PTEN_C2_2 176 315 IPR014020 -
Trre16g05322 1131 Gene3D Formin, FH2 domain 718 1100 IPR042201 -
Trre16g05322 1131 ProSiteProfiles Formin homology-2 (FH2) domain profile. 716 1115 IPR015425 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 774 790 - -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 550 568 - -
Trre16g05322 1131 Coils Coil 996 1016 - -
Trre16g05322 1131 SMART it6_source 557 1131 IPR015425 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 671 685 - -
Trre16g05322 1131 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 180 316 IPR035892 -
Trre16g05322 1131 ProSiteProfiles C2 tensin-type domain profile. 178 316 IPR014020 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 575 602 - -
Trre16g05322 1131 Gene3D Protein tyrosine phosphatase superfamily 3 177 IPR029021 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 481 499 - -
Trre16g05322 1131 Pfam C2 domain of PTEN tumour-suppressor protein 179 315 IPR014020 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 411 713 - -
Trre16g05322 1131 Pfam Formin Homology 2 Domain 721 1089 IPR015425 -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 770 791 - -
Trre16g05322 1131 SUPERFAMILY Formin homology 2 domain (FH2 domain) 791 1109 - -
Trre16g05322 1131 Gene3D - 178 319 - -
Trre16g05322 1131 Coils Coil 1090 1110 - -
Trre16g05322 1131 CDD SP5_N 484 544 - -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 444 463 - -
Trre16g05322 1131 PANTHER FORMIN-J 4 1116 - -
Trre16g05322 1131 MobiDBLite consensus disorder prediction 612 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05322 Trre-Chr16 56303887 56312599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05322 4 404 Protein tyrosine phosphatase (PTP) family AT5G58160 62.129 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05322 - - aprc:113848377 1683.31