Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05317 ATGGTTATTAGAGACATGAAGGGTGATTCAATACATGTGCTGTTTGGACCTGAAGAATACAAAAAGAGGAAAGATGAGTTTGATGCTCTTATGAAACTTAAAACATGTTTAATGAGCAATTTTAGGCTTCAGCCCAATGAAGATAAGTTTAAACTAACTCCTCATCCATTTAAGTTGCATATCATTTCTGGGACAACCATTAAGCCAAATGATATGCCAACAATGCCTGATTATTTCTTCAAGTTCATGAAATTTGATGATATCAAAGCTATGACTTTTCGTGAAAATATCTTAGTTGATGTCATTGGTGCTGTTCATGAAATTGGATCTGCCCAAACAACTGCAACTACCGGAAAACTTAACATATCTTTCCGAATCAAAGACTTGAGTGGAACTGTATTGGACTGTATACTTTGGGAAAGTGTTGCTTCCAATTTCATGGAATACTGCAAGAATCGAACCGAAGAGGGTCCTATGATCATGATCATTCGACGTGCTAGGCTTCAAAAACCCACAGATCGTTATCCTTTGCAAATTTCCAATGCATGGAATGGAACTAAGCTGATCATTAATCAAGACATTCCTGATATCAATGAGTTCAAAAAAAGCTTACCTGCGGACAACAGCTATGCTACGCAAAACAAAATGATGTCCTTTTCTTCCCAAAGGTTTGCAAGTAGTGCAGGTGGATCACAAATGATACCGGAGGATAACTTCATACAAAATTATCGCATTCTCAAACTTTCTGATATTATGAGACTTCCTAAGGATGAAATATGTGTGACTGTTGTCAAAACTACTTGCCTTAAACCTTCTGATCGTGGATGGTACATGCTTGGATGCAAAAGCTGCACTAGGGAAACTAAAGGGACTGAACCACCATATGCATGTGGTGAAGGTCACAAAACTGCTGATCCTATACTCAGATTTAGGATTGATGTTGAAGTCTCCGATGGAGATGACAAAACTAAGTTTGTCTTCTGGGATAATAGTTGCATTGATTTATTAGGAGCTACTGCTTCTGATCTTCAAAAACAAATGCTTGAGGATGGGGTTACTGATCCTTTGGAATATCCTAAAACTATTGATGAAATGATGGGAAGGACTTTTGCTTTCCGTGTCAAATGGCAAAAAGACTGGAAAGCATGTTCAGTTTTAGAGTGCAAGGATAGCAAGGTTTTGGTTTCTCGCATTCAGAAAGAGCTCAACATTGAAATCCCAGTCGACTCTGCTGAGACATGTCACTCTACAAAATCTGTTCAACCTGAATCCTCTCAGCCTAAAGAAATTGAAGTTCAATGCTCTCAATTTGTGCAACCTCCAGTTTTGGATAGCTTAGATGAAGCTCAAGTTGTTTCTCAAGACCTTTCTGCCTCTGCTGACTTTGATCCACTCAATGAAACAAATCTCACTCCATGTAAAAGATCACCAGTCAAAGAGAACATTGATGACATTCTCAGCGCACAACAATCTTCAACCAAGCTCATCAAAACAAGAACAACGAAGCATATCAAAATTGAAAAATCCTAA 1530 0.3817 MVIRDMKGDSIHVLFGPEEYKKRKDEFDALMKLKTCLMSNFRLQPNEDKFKLTPHPFKLHIISGTTIKPNDMPTMPDYFFKFMKFDDIKAMTFRENILVDVIGAVHEIGSAQTTATTGKLNISFRIKDLSGTVLDCILWESVASNFMEYCKNRTEEGPMIMIIRRARLQKPTDRYPLQISNAWNGTKLIINQDIPDINEFKKSLPADNSYATQNKMMSFSSQRFASSAGGSQMIPEDNFIQNYRILKLSDIMRLPKDEICVTVVKTTCLKPSDRGWYMLGCKSCTRETKGTEPPYACGEGHKTADPILRFRIDVEVSDGDDKTKFVFWDNSCIDLLGATASDLQKQMLEDGVTDPLEYPKTIDEMMGRTFAFRVKWQKDWKACSVLECKDSKVLVSRIQKELNIEIPVDSAETCHSTKSVQPESSQPKEIEVQCSQFVQPPVLDSLDEAQVVSQDLSASADFDPLNETNLTPCKRSPVKENIDDILSAQQSSTKLIKTRTTKHIKIEKS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05317 509 CDD RPA1_DBD_B_like 100 205 - -
Trre16g05317 509 Gene3D - 74 216 IPR012340 -
Trre16g05317 509 PANTHER OS03G0429900 PROTEIN 81 451 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g05317 509 Pfam Domain of unknown function DUF223 1 98 IPR003871 -
Trre16g05317 509 Gene3D - 1 69 IPR012340 -
Trre16g05317 509 SUPERFAMILY Nucleic acid-binding proteins 255 380 IPR012340 -
Trre16g05317 509 SUPERFAMILY Nucleic acid-binding proteins 80 210 IPR012340 -
Trre16g05317 509 Gene3D - 225 401 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05317 Trre-Chr16 56281165 56283626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05317 27 343 Core DNA Replication Machinery Family AT5G45400 22.356 1.80e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05317 - - tpra:123884216 346.665