Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05316 ATGTCCAGAGCTTGTGATCACATCAAAGATCTCAATGACAAAAAAGAAGTCTGGAAACTTGCAGTCAGAATTGATGATATCTGGAGTAATACCAAATCCTCCAAAGAATATGCTGAAATGGTTATTAGAGACATGAAGGGTGATTCAATACATGTGCTGTTTGGACCTGAAGAATACAAAAAGAGGAAAGATGAGTTTGATGCTCTTATGAAACTTAAAACATGTTTAATGAGCAATTTTAGGCTTCAGCCCAATGAAGATAAGTTTAAACTAACTCCTCATCCATTTAAGTTGCATATCATTTCTGGGACAACCATTAAGCCAAATGATATGCCAACAATGCCTGATTATTTCTTCAAGTTCATGAAATTTGATGATATCAAAGCTATGACTTTTCGTGAAAATATCTTAGTTGATGTCATTGGTGCTGTTCATGAAATTGGATCTGCCCAAACAACTGCAACTACCGGAAAACTTAACATATCTTTCCGAATCAAAGACTTGAGTGGAACTGTATTGGACTGTATACTTTGGGAAAGTGTTGCTTCCAATTTCATGGAATACTGCAAGAATCGAACCGAAGAGGGTCCTATGATCATGATCATTCGACGTGCTAGGCTTCAAAAACCCACAGATCGTTATCCTTTGCAAATTTCCAATGCATGGAATGGAACTAAGCTGATCATTAATCAAGACATTCCTGATATCAATGAGTTCAAAAAAAGCTTACCTGCGGACAACAGCTATGCTACGCAAAACAAAATGATGTCCTTTTCTTCCCAAAGGTTTGCAAGTAGTGCAGGTGGATCACAAATGATACCGGAGGATAACTTCATACAAAATTATCGCATTCTCAAACTTTCTGATATTATGAGACTTCCTAAGGATGAAATATGTGTGACTGTTGTCAAAACTACTTGCCTTAAACCTTCTGATCGTGGATGGTACATGCTTGGATGCAAAAGCTGCACTAGGGAAACTAAAGGGACTGAACCACCATATGCATGTGGTGAAGGTCACAAAACTGCTGATCCTATACTCAGATTTAGGATTGATGTTGAAGTCTCCGATGGAGATGACAAAACTAAGTTTGTCTTCTGGGATAATAGTTGCATTGATTTATTAGGAGCTACTGCTTCTGATCTTCAAAAACAAATGCTTGAGGATGGGGTTACTGATCCTTTGGAATATCCTAAAACTATTGATGAAATGATGGGAAGGACTTTTGCTTTCCGTGTCAAATGGCAAAAAGACTGGAAAGCATGTTCAGTTTTAGAGTGCAAGGATAGCAAGGTTTTGGTTTCTCGCATTCAGAAAGAGCTCAACATTGAAATCCCAGTCGACTCTGCTGAGACATGTCACTCTACAAAATCTGTTCAACCTGAATCCTCTCAGCCTAAAGAAATTGAAGTTCAATGCTCTCAATTTGTGCAACCTCCAGTTTTGGATAGCTTAGATGAAGCTCAAGTTGTTTCTCAAGACCTTTCTGCCTCTGCTGACTTTGATCCACTCAATGAAACAAATCTCACTCCATGTAAAAGATCACCAGTCAAAGAGAACATTGATGACATTCTCAGCGCACAACAATCTTCAACCAAGCTCATCAAAACAAGAACAACGAAGCATATCAAAATTGAAAAATCCTAA 1647 0.3807 MSRACDHIKDLNDKKEVWKLAVRIDDIWSNTKSSKEYAEMVIRDMKGDSIHVLFGPEEYKKRKDEFDALMKLKTCLMSNFRLQPNEDKFKLTPHPFKLHIISGTTIKPNDMPTMPDYFFKFMKFDDIKAMTFRENILVDVIGAVHEIGSAQTTATTGKLNISFRIKDLSGTVLDCILWESVASNFMEYCKNRTEEGPMIMIIRRARLQKPTDRYPLQISNAWNGTKLIINQDIPDINEFKKSLPADNSYATQNKMMSFSSQRFASSAGGSQMIPEDNFIQNYRILKLSDIMRLPKDEICVTVVKTTCLKPSDRGWYMLGCKSCTRETKGTEPPYACGEGHKTADPILRFRIDVEVSDGDDKTKFVFWDNSCIDLLGATASDLQKQMLEDGVTDPLEYPKTIDEMMGRTFAFRVKWQKDWKACSVLECKDSKVLVSRIQKELNIEIPVDSAETCHSTKSVQPESSQPKEIEVQCSQFVQPPVLDSLDEAQVVSQDLSASADFDPLNETNLTPCKRSPVKENIDDILSAQQSSTKLIKTRTTKHIKIEKS 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05316 548 Gene3D - 3 108 IPR012340 -
Trre16g05316 548 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
Trre16g05316 548 Pfam Domain of unknown function DUF223 39 137 IPR003871 -
Trre16g05316 548 SUPERFAMILY Nucleic acid-binding proteins 294 419 IPR012340 -
Trre16g05316 548 Gene3D - 113 255 IPR012340 -
Trre16g05316 548 Gene3D - 264 440 IPR012340 -
Trre16g05316 548 CDD RPA1_DBD_B_like 139 244 - -
Trre16g05316 548 PANTHER OS03G0429900 PROTEIN 8 490 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g05316 548 SUPERFAMILY Nucleic acid-binding proteins 119 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05316 Trre-Chr16 56281165 56283743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05316 8 382 Core DNA Replication Machinery Family AT5G45400 21.772 1.19e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05316 - - tpra:123884216 380.178