Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05311 ATGGGTTTAGGAGTATTTGGATCTGTTCTTGTTTTGACATTTTTGTTTAAGCATTTAGCTTCTCAGCAACCAAACACTGATGAATTTTATGTATCTGATTTTTTGAAGAAAATGGGTTTAACATCATCCTCAAAAGTTTACAACTTTTCATCTTCTGTTTGTTCATGGAAAGGTGTTACCTGTGATTCAAATAAAGAACATGTTGTTAAGTTAAATCTTTCTGGTATTGGTCTCACTGGTCCTATTCCTGATACAACTATTGGAAAACTTAGCAAACTTCAATCTTTGGATCTTAGCAGAAACAAAATCACTGCTTTACCTTCAGATTTTTGGAGTTTAACCTCTCTCAAAAATCTTAACCTTTCTTCCAATCAAATTTCAGGTTCATTGACTAACAACATTGGAAACTTTGGTTTACTTGAAAACTTTGACTTGTCAAAGAACAATTTCTCTGATGAAATTCCTGAAGCTTTGAGTTCACTTGTGAATTTGAAAGTTCTTAAACTTGACCACAACATGTTTGTTAGAAGTATTCCTTCAGGAATTCTCAAGTGTGAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAACTGAGTGGAACACTTCCACATGGTTTTGGTGATGCTTTTCCTAAGCTTAGGACTATGAATCTTGCTGAGAATAATTTCGATGGAGGTGTCTCGGATTTTTCAGGGTTAAAGTCCATTGTGAGTCTTAATATATCAGGAAATTCATTTCAGGGTTCTATTATTGAAGTCATTGAGTTAAAGTTGGAGGTTTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTACATTACAATTGGTCTCATTTAGTTTATCTGGATTTGTCTGAGAATCAGCTTAGTGGTGAAATTTTCCAAAACTTGAACAATTCACTGAATTTAAAACACCTTAATCTTGCATGCAATAGATTTACAAGACAGAAATTCCCACAGATTGAAATGCTACTAGGATTGGAATATCTTAACTTGTCCAAAACTAGTCTTGTTGGTCACATTCCTGACAAAATCTCAAAACTTGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGGAAAATTCCATTATTGAAGAATAAACACCTCCAAGTTATTGACCTTTCACACAACAATTTGAGTGGACCAGTCCCTTCATCTGTCTTGGAGAATCTCCCAAAGATGAAGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGCATTAGAAATCAAATCCGATATCCTGCAGACATCGTTCTTTGGATCAGTTAACAGTTGTCCAATAGCTGCGAACCCGAGTCTTTTCAAAAGAAGAAGAGACACTCACCACAAGGGAATGAAGTTAGCTCTTGTATTGACCCTTGTATTGATATTTGCGCTTGCCGGGATTTTGTTTCTAGCATTTGGTTGCAGAAGGAAACAGAAAATGTGGGAAGTAAAGCCAGGTTCATACAGAGAAGAACAGAATATCTCAGGTCCATTTTCCTTCCAAACTGATTCAACAACTTGGGTGGCTGATGTGAAACAAGCAACATCAGTTCCAGTAGTAATCTTCGAGAAGCCGTTGTTGAATATTACCTTTGCAGATCTCTTATCTGCAACTTCAAATTTCGATAGAGGTACCCTTTTGGCTGAAGGAAAATTTGGACCTGTTTATAGAGGCTTTCTACCCGGAAATATTCATGTTGCGGTTAAAGTTTTGGTTTTTGGTTCTACATTAACAGATGAAGAAGCTGCTAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCACCCTAATCTAGTTCCTTTAACTGGTTATTGTGTAGCTGGTGATCAAAGAATTGCTATATATGATTACATGGAGAATGGAAACTTGCAAAACCTTCTTTATGATTTACCACTCGGTGTTCAAAGCACAGATGATTGGAGCACAGACACATGGGAAGAAGCTGCTGATAGTAATGGAATTCAAAATGTTGGTTCTGAAGGATTACTCACAACTTGGCGATTTCGACACAAAATCGCTCTTGGAACTGCAAGAGCATTGGCATTTCTTCACCATGGATGCTCTCCTCCAATGATTCACAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGACTATGATTTGGAGCCTAGGTTGTCTGATTTTGGACTTGCAAAGATTTTCGGAAGTGGTTTGGACGAAGAGATTGCACGTGGTTCGCCTGGTTATGTTCCGCCGGAGTTCTCTCAACCGGAATTTGATGACTCTCCAACGCCGAAATCTGATGTATATTGTTTTGGTGTTGTTCTGTTTGAGCTTCTAACTGGAAAGAAACCGGTTGGAGATGATTATACTGATGACAAAGAAGCAACAACTTTGGTAAGTTGGGTTAGAGGACTTGTAAGAAAGAATCAAACCTCAAGAGCTATTGATCCTAAAATTCGCGATACGGGATCGGATGAACAAATGGAGGAAGCTCTTAAGATTGGATATCTATGCACAGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGTCTTCTAAAGGATATTGAACCTTCAACTAGTTAG 2565 0.3739 MGLGVFGSVLVLTFLFKHLASQQPNTDEFYVSDFLKKMGLTSSSKVYNFSSSVCSWKGVTCDSNKEHVVKLNLSGIGLTGPIPDTTIGKLSKLQSLDLSRNKITALPSDFWSLTSLKNLNLSSNQISGSLTNNIGNFGLLENFDLSKNNFSDEIPEALSSLVNLKVLKLDHNMFVRSIPSGILKCESLVSIDLSSNQLSGTLPHGFGDAFPKLRTMNLAENNFDGGVSDFSGLKSIVSLNISGNSFQGSIIEVIELKLEVLDLSRNQFQGHISQVHYNWSHLVYLDLSENQLSGEIFQNLNNSLNLKHLNLACNRFTRQKFPQIEMLLGLEYLNLSKTSLVGHIPDKISKLGNLNALDLSMNHLDGKIPLLKNKHLQVIDLSHNNLSGPVPSSVLENLPKMKKYNFSYNNLTLCALEIKSDILQTSFFGSVNSCPIAANPSLFKRRRDTHHKGMKLALVLTLVLIFALAGILFLAFGCRRKQKMWEVKPGSYREEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGNIHVAVKVLVFGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEAADSNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPMIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSQPEFDDSPTPKSDVYCFGVVLFELLTGKKPVGDDYTDDKEATTLVSWVRGLVRKNQTSRAIDPKIRDTGSDEQMEEALKIGYLCTADLPFKRPTMQQIVGLLKDIEPSTS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05311 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 506 620 - -
Trre16g05311 854 Gene3D Ribonuclease Inhibitor 32 179 IPR032675 -
Trre16g05311 854 Gene3D Ribonuclease Inhibitor 180 255 IPR032675 -
Trre16g05311 854 SMART LRR_typ_2 113 137 IPR003591 -
Trre16g05311 854 SMART LRR_typ_2 161 185 IPR003591 -
Trre16g05311 854 SMART LRR_typ_2 90 112 IPR003591 -
Trre16g05311 854 Pfam Leucine Rich repeat 280 295 IPR001611 GO:0005515
Trre16g05311 854 Pfam Leucine Rich repeat 372 388 IPR001611 GO:0005515
Trre16g05311 854 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Trre16g05311 854 FunFam Nuclear pore complex protein NUP107 30 180 - -
Trre16g05311 854 FunFam Calmodulin-binding receptor kinase CaMRLK 256 370 - -
Trre16g05311 854 Gene3D Ribonuclease Inhibitor 324 443 IPR032675 -
Trre16g05311 854 Gene3D Ribonuclease Inhibitor 256 323 IPR032675 -
Trre16g05311 854 SUPERFAMILY L domain-like 43 415 - -
Trre16g05311 854 Gene3D Phosphorylase Kinase; domain 1 505 620 - -
Trre16g05311 854 SMART LRR_sd22_2 373 400 - -
Trre16g05311 854 SMART LRR_sd22_2 90 121 - -
Trre16g05311 854 SMART LRR_sd22_2 279 302 - -
Trre16g05311 854 Pfam Protein tyrosine and serine/threonine kinase 549 844 IPR001245 GO:0004672|GO:0006468
Trre16g05311 854 ProSiteProfiles Protein kinase domain profile. 545 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05311 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 213 849 - -
Trre16g05311 854 Pfam Leucine rich repeat 68 126 IPR001611 GO:0005515
Trre16g05311 854 Pfam Leucine rich repeat 187 245 IPR001611 GO:0005515
Trre16g05311 854 SUPERFAMILY Protein kinase-like (PK-like) 522 846 IPR011009 -
Trre16g05311 854 PRINTS Leucine-rich repeat signature 351 364 - -
Trre16g05311 854 PRINTS Leucine-rich repeat signature 282 295 - -
Trre16g05311 854 Gene3D Transferase(Phosphotransferase) domain 1 621 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05311 Trre-Chr16 56237092 56239656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05311 78 849 Receptor kinase-like Gene Family AT5G07280 32.403 2.51e-108 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trre16g05311 PK_Tyr_Ser-Thr 5.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05311 - - gmx:100797738 1392.1