Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05309 ATGGCTGAGCATCGAGACTCCGAAGCTCTCCCAAAAGGAAATTGTTCAGAAAGCAACGATGAACAAAAAGCTGAAGAGATAAAGGAAAAAGTCACTGAATCACCGCCAGCCACCGAGTCGCAGAAAGACGATTTACCGAATTCTATAGAGCATAATTCAGAAACCCTAATTGCTTTTCCATCTTCAGTTTTACAGAATCAAAGTATCGTTGCAGATTTGCAAGGGAGCCCTAATACGACTGTGAATTCAGGCGCCAAAGCTGAAACTAAGGAAACAGTTGGACCTCCTGAAAAGGAAGTTACTGCAAGACAAGAAGCCCAAACACCCCCAACTCAGACCGGAAATCAGCTTCAATTGACTGTGTTTTCAACACCATTGTCTGAAGTATCATCACCAAATTTTGTTACAAACTCTGTATCATCTGTTCCTAGTCCAACTATGGGAATAGAGAAAATGTCTACTCCTAATGTTAGTAATATGCTTGTGCTTTCTGGTGCTAAAGCTAAACCCTTATCTTCTGTTAGTGTTCCAAGGACACCGTCATCTGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTTAAGAGTCCTACTACAAGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTGGTGCTAAGAAGATTGAATGTTGGGATCATTCAGGTCATGTGATAGAGACTGTTTACAGAAGTGAGCACAGTCATGATCCCCCGCGAAAGATAAATTCCATTAGGGAAAGTAAGTTTGCACCTTCTAATGAACCTACTGCAGAGAACAGTGTTTCAGTGAAGCCTGTCAATGTTCCAAAAGAATCTGAGCCATCCACGTCTTCCAAAGCTCAAGAAGAAGCACCTTGTGGTACTGACAAGAAACCACAAAACTCATCTAATATCAATGGTAATGGTAAAGTTATTTTGAAGGAGGAACATCTAGACGAGCCAGAGCCAAAGCGAAGGCAAGAGAAAGACGACTTAATTCACTCAGATTCTCCCGTAAATCATGGAAAGAAACCCAAGTATGTTGTACATGCAGCAGGAGATGTAGGGATATCAGGGGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGTAACCCACATCCCAGAAACTACTATAGATGCACTTCTGCTGGATGTCCTGTCCGGAAGCACATTGAGACTGCCGTAGACAACTCAGATGCTGTCATCATAACGTACAAGGGTGTACATGATCATGACACTCCTGTGCCTAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTGGCCGCTGCAGCACCTGTTTCCATGAACAATTTGCAGTTGACTAAACCGGACTCGCCACAAAATCAGAAAGTTTCTACTCAATGGTCAGTGGACAAAGAAGGAGAACTAACTGGGGAAGCCATGGACCTTGGGGGTGAGAAAGCAATAGAGTCAGCTAAAACCCTTCTGAGCATAGGTTTTGAAATTAAACCTTGCTGA 1482 0.4332 MAEHRDSEALPKGNCSESNDEQKAEEIKEKVTESPPATESQKDDLPNSIEHNSETLIAFPSSVLQNQSIVADLQGSPNTTVNSGAKAETKETVGPPEKEVTARQEAQTPPTQTGNQLQLTVFSTPLSEVSSPNFVTNSVSSVPSPTMGIEKMSTPNVSNMLVLSGAKAKPLSSVSVPRTPSSDGYNWRKYGQKQVKSPTTSSRSYYRCTQSNCGAKKIECWDHSGHVIETVYRSEHSHDPPRKINSIRESKFAPSNEPTAENSVSVKPVNVPKESEPSTSSKAQEEAPCGTDKKPQNSSNINGNGKVILKEEHLDEPEPKRRQEKDDLIHSDSPVNHGKKPKYVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPVSMNNLQLTKPDSPQNQKVSTQWSVDKEGELTGEAMDLGGEKAIESAKTLLSIGFEIKPC 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05309 493 Pfam WRKY DNA -binding domain 183 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 Pfam WRKY DNA -binding domain 356 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 MobiDBLite consensus disorder prediction 70 87 - -
Trre16g05309 493 MobiDBLite consensus disorder prediction 1 54 - -
Trre16g05309 493 ProSiteProfiles WRKY domain profile. 349 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 ProSiteProfiles WRKY domain profile. 182 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 MobiDBLite consensus disorder prediction 18 37 - -
Trre16g05309 493 MobiDBLite consensus disorder prediction 308 339 - -
Trre16g05309 493 MobiDBLite consensus disorder prediction 70 115 - -
Trre16g05309 493 MobiDBLite consensus disorder prediction 249 305 - -
Trre16g05309 493 MobiDBLite consensus disorder prediction 232 246 - -
Trre16g05309 493 Gene3D WRKY domain 339 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 Gene3D WRKY domain 171 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 126 451 IPR044810 GO:0003700
Trre16g05309 493 FunFam WRKY transcription factor 341 415 - -
Trre16g05309 493 SUPERFAMILY WRKY DNA-binding domain 350 414 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 SUPERFAMILY WRKY DNA-binding domain 177 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 MobiDBLite consensus disorder prediction 232 340 - -
Trre16g05309 493 SMART WRKY_cls 181 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05309 493 SMART WRKY_cls 354 413 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05309 Trre-Chr16 56223799 56227921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05309 171 493 WRKY Transcription Factor Family AT4G30935 60.429 1.14e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g05309 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05309 - - mtr:11440414 722.62