Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05307 ATGGCTGAGCATCGAGACTCCGAAGCTCTCCCAAAAGGAAATTGTTCAGAAAGCAACGATGAACAAAAAGCTGAAGAGATAAAGGAAAAAGTCACTGAATCACCGCCAGCCACCGAGTCGCAGAAAGACGATTTACCGAATTCTATAGAGCATAATTCAGAAACCCTAATTGCTTTTCCATCTTCAGTTTTACAGAATCAAAGTATCGATTTGCAAGGGAGCCCTAATACGACTGTGAATTCAGGCGCCAAAGCTGAAACTAAGGAAACAGTTGGACCTCCTGAAAAGGAAGTTACTGCAAGACAAGAAGCCCAAACACCCCCAACTCAGACCGGAAATCAGCTTCAATTGACTGTGTTTTCAACACCATTGTCTGAAGTATCATCACCAAATTTTGTTACAAACTCTGTATCATCTGTTCCTAGTCCAACTATGGGAATAGAGAAAATGTCTACTCCTAATGTTAGTAATATGCTTGTGCTTTCTGGTGCTAAAGCTAAACCCTTATCTTCTGTTAGTGTTCCAAGGACACCGTCATCTGATGGATACAACTGGCGGAAATATGGTCAGAAGCAAGTTAAGAGTCCTACTACAAGTTCTCGAAGCTATTACAGGTGTACTCAATCAAACTGTGGTGCTAAGAAGATTGAATGTTGGGATCATTCAGGTCATGTGATAGAGACTGTTTACAGAAGTGAGCACAGTCATGATCCCCCGCGAAAGATAAATTCCATTAGGGAAAGTAAGTTTGCACCTTCTAATGAACCTACTGCAGAGAACAGTGTTTCAGTGAAGCCTGTCAATGTTCCAAAAGAATCTGAGCCATCCACGTCTTCCAAAGCTCAAGAAGAAGCACCTTGTGGTACTGACAAGAAACCACAAAACTCATCTAATATCAATGGTAATGGTAAAGTTATTTTGAAGGAGGAACATCTAGACGAGCCAGAGCCAAAGCGAAGAAAGGAGAAAGACGACTTAATTCACTCAGATTCTCCCGTAAATCATGGAAAGAAACCCAAGTATGTTGTACATGCAGCAGGAGATGTAGGGATATCAGGGGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGTAACCCACATCCCAGAAACTACTATAGATGCACTTCTGCTGGATGTCCTGTCCGGAAGCACATTGAGACTGCCGTAGACAACTCAGATGCTGTCATCATAACGTACAAGGGTGTACATGATCATGACACTCCTGTGCCTAAGAAACGACATGGCCCACCAAGTGCTCCTCTTGTGGCCGCTGCAGCACCTGTTTCCATGAACAATTTGCAGTTGACTAAACCGGACTCGCCACAAAATCAGAAAGTTTCTACTCAATGGTCAGTGGACAAAGAAGGAGAACTAACTGGGGAAGCCATGGACCTTGGGGGTGAGAAAGCAATAGAGTCAGCTAAAACCCTTCTGAGCATAGGTTTTGAAATTAAACCTTGCTGA 1476 0.4322 MAEHRDSEALPKGNCSESNDEQKAEEIKEKVTESPPATESQKDDLPNSIEHNSETLIAFPSSVLQNQSIDLQGSPNTTVNSGAKAETKETVGPPEKEVTARQEAQTPPTQTGNQLQLTVFSTPLSEVSSPNFVTNSVSSVPSPTMGIEKMSTPNVSNMLVLSGAKAKPLSSVSVPRTPSSDGYNWRKYGQKQVKSPTTSSRSYYRCTQSNCGAKKIECWDHSGHVIETVYRSEHSHDPPRKINSIRESKFAPSNEPTAENSVSVKPVNVPKESEPSTSSKAQEEAPCGTDKKPQNSSNINGNGKVILKEEHLDEPEPKRRKEKDDLIHSDSPVNHGKKPKYVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDTPVPKKRHGPPSAPLVAAAAPVSMNNLQLTKPDSPQNQKVSTQWSVDKEGELTGEAMDLGGEKAIESAKTLLSIGFEIKPC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05307 491 ProSiteProfiles WRKY domain profile. 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 MobiDBLite consensus disorder prediction 247 303 - -
Trre16g05307 491 MobiDBLite consensus disorder prediction 230 244 - -
Trre16g05307 491 MobiDBLite consensus disorder prediction 172 204 - -
Trre16g05307 491 MobiDBLite consensus disorder prediction 1 54 - -
Trre16g05307 491 FunFam WRKY transcription factor 339 413 - -
Trre16g05307 491 SMART WRKY_cls 352 411 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 SMART WRKY_cls 179 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 MobiDBLite consensus disorder prediction 18 37 - -
Trre16g05307 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 124 449 IPR044810 GO:0003700
Trre16g05307 491 MobiDBLite consensus disorder prediction 230 338 - -
Trre16g05307 491 MobiDBLite consensus disorder prediction 67 115 - -
Trre16g05307 491 Pfam WRKY DNA -binding domain 354 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 Pfam WRKY DNA -binding domain 181 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 Gene3D WRKY domain 337 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 Gene3D WRKY domain 169 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 ProSiteProfiles WRKY domain profile. 347 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 MobiDBLite consensus disorder prediction 128 149 - -
Trre16g05307 491 SUPERFAMILY WRKY DNA-binding domain 348 412 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 SUPERFAMILY WRKY DNA-binding domain 175 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g05307 491 MobiDBLite consensus disorder prediction 67 85 - -
Trre16g05307 491 MobiDBLite consensus disorder prediction 166 204 - -
Trre16g05307 491 MobiDBLite consensus disorder prediction 306 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05307 Trre-Chr16 56223799 56227921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05307 169 491 WRKY Transcription Factor Family AT4G30935 60.429 1.41e-123 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g05307 WRKY 2.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05307 - - mtr:11440414 729.169