Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05303 ATGAACGTGATCACATCTAAGAACTCGTATCATTTGGGAGATGGATCAAAACCTATCAAACAAGCATTGGCAGCTGCTTTCTATGGAAACAAAACTGCAATCTTTAATTGTAGTTTTTTGAGTTATCAAGATACTTTGTTTGCAGCTATGGGTCGACATTACTTTAAAGGTGAAACCAACTTCATTTTTGGTGCAGGCCAATCTTATTTTGAGGTAAAACGTGTTTAA 228 0.3553 MNVITSKNSYHLGDGSKPIKQALAAAFYGNKTAIFNCSFLSYQDTLFAAMGRHYFKGETNFIFGAGQSYFEVKRV 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05303 75 Pfam Pectinesterase 20 70 IPR000070 GO:0030599|GO:0042545
Trre16g05303 75 Gene3D - 1 73 IPR012334 -
Trre16g05303 75 SUPERFAMILY Pectin lyase-like 7 71 IPR011050 -
Trre16g05303 75 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 19 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05303 Trre-Chr16 56209325 56209947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05303 4 71 Carbohydrate Esterase AT2G19150 47.945 2.97e-15 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05303 - - mtr:11437296 101.293