Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05302 ATGGGCGGCCAGCGAGAAAATTCTTTTAGGTGGGATGTCTTGGATTCTAGACTATCATCATCTTCTGATGTCAGAGTCACCAAATCTGGATTTAATTCAGTACAGATAGCCAAGCGATACCTGCGACGATATTTCGTCATCGATTTCCTATCTGTGTTGCCGGTACCACAGATTGTTGTCTGGAGATTTCTTCAGAGGTGCTGCATATTATTTGATGTTGTACATGCTTGCCAGTCATATAGTTGGTTCTTTTTGACGTTCATCTCGAAATATTGTTATTGTTTATGGTGGGGTCTCCAAAATTTAAGTACCCTTGGTCAGGGGCTTCAGACTAGCACCTATCCTGGAGAGGTTATCTTTTCGATAGCACTTGCCATAGCAGGCCTCATCCTCTTTGCACTTCTGATCGGCAACATGCAGACATATCTTCAATCTCTTACCCTTAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCAAAAGAGCTTAGAGAGCGTGTGAGACGTGAGAAGGGTTCCACTATTTGA 558 0.4373 MGGQRENSFRWDVLDSRLSSSSDVRVTKSGFNSVQIAKRYLRRYFVIDFLSVLPVPQIVVWRFLQRCCILFDVVHACQSYSWFFLTFISKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTLRLEEMRVKRRDSEQWMHHRLLPKELRERVRREKGSTI 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05302 185 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 31 64 - -
Trre16g05302 185 SUPERFAMILY Voltage-gated potassium channels 35 144 - -
Trre16g05302 185 Gene3D - 55 182 - -
Trre16g05302 185 Pfam Ion transport protein 89 149 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05302 Trre-Chr16 56203665 56208258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05302 86 179 Ion Channels AT1G19780 88.298 1.91e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05302 K05391 - bvg:104893415 172.555