Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05301 ATGGTTTCTTCTCCAATATTGTTGATTACCATTTTCTCAATTTGGCTTCTAATTTCCTGCTCCGAATCCAAAGAATATATTGTTGGTGTACGTGACGGTAAAAAATCATGGAGGTTTCCTCTTCCATCGTTTCATGCATTCACCAACTGGTCCTCTACTCATCAATTCACAATTGGCGATACCATCGTGTTTGAGTACGATAAGATGAAAGAATCAGTGCATGAAGTGAATGAACATGGCTATATAAAGAGTACGCTATTTCATAAGTGGAAGAAAGGCTCATTGCAAAATGGGATTAAAGGAGCTGAAAATAATAATCAAGCACCACCTCGACCACATTCAACAGAGGTACTTCACCAACGTAAGAAAGCACCATTTTGTCCAATGAGAATGGCCATTGGAGGTTTTGCAGCAATTTCTGTGTTAGGTTATTTTGTTTTGTACGCTAATAAGAAGCCTGAAGCATCAGCTTTGGATGTTGCTAAGGTTTCTTCTGGGGTGGCCCATCCAGATAATACACATCCTCTCACCGGAACTTCAACATCCATCCACTATTTTTTCTCTATGAGTCAGCAGGCAGTGCTTCTGTGA 591 0.401 MVSSPILLITIFSIWLLISCSESKEYIVGVRDGKKSWRFPLPSFHAFTNWSSTHQFTIGDTIVFEYDKMKESVHEVNEHGYIKSTLFHKWKKGSLQNGIKGAENNNQAPPRPHSTEVLHQRKKAPFCPMRMAIGGFAAISVLGYFVLYANKKPEASALDVAKVSSGVAHPDNTHPLTGTSTSIHYFFSMSQQAVLL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05301 196 PANTHER OS09G0127700 PROTEIN 81 175 - -
Trre16g05301 196 Gene3D - 23 121 IPR008972 -
Trre16g05301 196 SUPERFAMILY Cupredoxins 23 83 IPR008972 -
Trre16g05301 196 Pfam Plastocyanin-like domain 45 83 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05301 Trre-Chr16 56197995 56203617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05301 9 81 Phytocyanin Superfamily AT2G25060 38.356 2.74e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05301 - - tpra:123906923 141.739