Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05300 ATGGCTTCTTCTTCTTCTCCAATATTGTTGATTATCATTTTCTCAATATTGTCCCTGCTAATTTCATGCTCTGAATCCACAGAGCATATGGTTGGAGACGATCAATTTGTTTGGAAGGTTCCTCTTTCATCACCAGATGATCTCATTCTATGGTCCTCTTCTCACAATTTCACAGTCGGCGATACTATCGTTTTTCGGTACAATACACGAAGAGAATCGGTTCGAGAAGTGATGAATGAGCATGACTTTATAAAGTGTAATACAAAGGGACCATTTGTGAGATTGGGGCACGATGGAAATACTAGAGTGGTGCTTGATAAACCAGGAATACACTATTTCATGAGTGGATGGAAGAGTCATTGCAAGAAGGGATTAAAGGTAGCTATTTTGGTCATTTCTCCCACAAATAATGAGCCTTTAGTTTCCAAGACTCCGCTAATTCGGCCGTCACTGACACTGCCTCGGCATTCGCCAAAGTCATTGTCACCGTCACCTTCACCTTCACCTTCACCTTCGCCATCTCCATCTCCATCTCCGTCACCAAATTCATCTGGTAGTAAAGGTGGTACTATTGGTTGTGGATTCATCATACTGATGGGTGTTTCATTGATGACTATGATGATGTTCTTAATTTAA 636 0.4119 MASSSSPILLIIIFSILSLLISCSESTEHMVGDDQFVWKVPLSSPDDLILWSSSHNFTVGDTIVFRYNTRRESVREVMNEHDFIKCNTKGPFVRLGHDGNTRVVLDKPGIHYFMSGWKSHCKKGLKVAILVISPTNNEPLVSKTPLIRPSLTLPRHSPKSLSPSPSPSPSPSPSPSPSPSPNSSGSKGGTIGCGFIILMGVSLMTMMMFLI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05300 211 MobiDBLite consensus disorder prediction 160 180 - -
Trre16g05300 211 PANTHER BLUE COPPER PROTEIN 28 150 IPR039391 GO:0009055
Trre16g05300 211 FunFam Cupredoxin superfamily protein 26 137 - -
Trre16g05300 211 SUPERFAMILY Cupredoxins 25 133 IPR008972 -
Trre16g05300 211 MobiDBLite consensus disorder prediction 147 187 - -
Trre16g05300 211 CDD Phytocyanin 27 131 - -
Trre16g05300 211 ProSiteProfiles Phytocyanin domain profile. 27 133 IPR003245 GO:0009055
Trre16g05300 211 Pfam Plastocyanin-like domain 38 124 IPR003245 GO:0009055
Trre16g05300 211 Gene3D - 24 133 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05300 Trre-Chr16 56192404 56193194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05300 1 210 Phytocyanin Superfamily AT4G31840 34.597 1.55e-28 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05300 - - tpra:123906925 261.922