Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05292 ATGGAGTTCAAATTTCGCACCGTCAACAACGTTAAACCATCAACCACGTTACCTTCTCTTCCCGCCGCCACATATCTCCCTGATAATCGATCACTTCCAACTCCATTGGACGGTGGATTTTCTGGCTTCCGAGTACCGATGGCCGCCAACGAGGCAGCATTACGGCGAGAGATTGAGAAGGAACAAATCCGGCGGGAGATACTCGCCGGCGAGGCGCGGCGGAGAGAGTTGGAGGAAGAAGTGAGGAGGGAACTTGCAATGGAGAGAGAATTGGGAATTCTTCCAATGCAGAGGCAACTGATTTCTCTATGGTCAAATTCTGCTGGTGTTGATGAACGCGTCGGTGTTTTGCAACCGCCGTTAATTATGGCGGAAATCAAACCTTCTCCGCAGATCAGTGATAAGGACGGAGTTATTGCCTTGGCTAAGCCAGATCCCGGTTTCTTAAGTCCAAAGCGAAAAGCAGATGATGTTCCTGATGCTGAGCCTTCTGCAATTGGTTTGAAGAAAAAACCCAAGGAGGAGTGGAGTTGTGAACTGTGTCAGATTAAAGCCACATGTGAGAGTGGTTTGAATGCTCATCTGAAAGGTAAGAAGCACAGGGTCAACGAATTAAGACAGAAGAGGAAGATTGACAGGATCAACAAGAAAAAAGAAAAAACTGCGAACAAGGCTACTGAAACAGTTGTTACTACCACAAAGTTAGGAGTTGATGCAGAAACAGATCAACAACCTCCTCAACCTTGCATAGCCGTGGAAGTCATGAATGAGACTATGGTTGATAAGGCTGTTGCAGAATCTAAAAAAGAGGAGCAGTTTGTTGAGATGGTGGTTGATAAAGGTGTAGCTGAAGCTGAAAAAGAGGTGCTGCTTGTGGAGACGGTGGCTGATAATGGTGTAGCTGAAGCTGGAAAAAAGGAGCTGGTGGAGACGGTGGCCGATAATGGTGTAAGTGTAACAGAACCTAAAAACGAGAAGACGCTTGTGGAGACAGTGGTTGATAAAAGTAAAACTGAGCTGAAGTTTGTGGAAAAAAGCCAAAACACAGGTTGGTTGGAGAGGAAGAAAGATGCTGCTGCACCTGAGGAAGCAGGGAAGATAGTTGCATGGACAAAAAGGAAGATGGTTCAACCTTTATGGTGTGAAATCTGTCAAATTGGCACTCCATCAGCAACTGTGATGGAAGGCCACATGAAAGGGAAAAAACACATGAAGAAAATGAAAAATTTTGGTCAAAAAAATGCAAGTCCTTCTTCAATATCCTCTGTATCACAAAAAGCTCCTAGGTTGACTGAAGATGCTAATGGTGTTAACAAAGAAACAGACCAAGTGATGATACCTGTGGTGAATGAAGTTGCTGAATTTTTTAAATTAAGATGA 1380 0.4442 MEFKFRTVNNVKPSTTLPSLPAATYLPDNRSLPTPLDGGFSGFRVPMAANEAALRREIEKEQIRREILAGEARRRELEEEVRRELAMERELGILPMQRQLISLWSNSAGVDERVGVLQPPLIMAEIKPSPQISDKDGVIALAKPDPGFLSPKRKADDVPDAEPSAIGLKKKPKEEWSCELCQIKATCESGLNAHLKGKKHRVNELRQKRKIDRINKKKEKTANKATETVVTTTKLGVDAETDQQPPQPCIAVEVMNETMVDKAVAESKKEEQFVEMVVDKGVAEAEKEVLLVETVADNGVAEAGKKELVETVADNGVSVTEPKNEKTLVETVVDKSKTELKFVEKSQNTGWLERKKDAAAPEEAGKIVAWTKRKMVQPLWCEICQIGTPSATVMEGHMKGKKHMKKMKNFGQKNASPSSISSVSQKAPRLTEDANGVNKETDQVMIPVVNEVAEFFKLR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05292 459 Pfam Zinc-finger of C2H2 type 380 403 - -
Trre16g05292 459 Pfam Zinc-finger of C2H2 type 176 200 - -
Trre16g05292 459 PANTHER OS06G0651300 PROTEIN-RELATED 1 419 - -
Trre16g05292 459 MobiDBLite consensus disorder prediction 411 431 - -
Trre16g05292 459 MobiDBLite consensus disorder prediction 411 436 - -
Trre16g05292 459 SMART ZnF_U1_5 376 410 IPR003604 GO:0003676|GO:0008270
Trre16g05292 459 SMART ZnF_U1_5 173 207 IPR003604 GO:0003676|GO:0008270
Trre16g05292 459 Gene3D Classic Zinc Finger 152 208 - -
Trre16g05292 459 Gene3D Classic Zinc Finger 354 409 - -
Trre16g05292 459 SMART c2h2final6 176 200 IPR013087 -
Trre16g05292 459 SMART c2h2final6 379 403 IPR013087 -
Trre16g05292 459 SUPERFAMILY beta-beta-alpha zinc fingers 373 409 IPR036236 -
Trre16g05292 459 Coils Coil 60 80 - -
Trre16g05292 459 SUPERFAMILY beta-beta-alpha zinc fingers 163 206 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05292 Trre-Chr16 56154875 56159119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05292 176 312 C2H2 Transcription Factor Family AT2G19380 26.667 1.31e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05292 - - tpra:123906929 645.58