Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05286 ATGCAGCAAGGTGATCAAACGGTTCTTAGCTTGAGGCCTGGTGGTGGTCGAGGAAACAGGCTTCTCGGTCCTAGATTTGATTCTTCCTCTTCCAACTCATCGATTAATCCTGCTTTTGGTTCCTTTTCATCTGATCTTTCTTTGCTTCGTCCTCATGGTGCTGCTTCTTCTCACTTTGCTTTTAAGGTCGGAGATTCGCAATTTGAAGGTCGTGAGCGTGTGCGATATACCAAAGAAGAGCTTTTAGAGATTAGAAAGACTGTTGAGGAGACCCCTGATGATATTTTGAAGCTCAGACATGATATTGATGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGTCATGTAGAAAACAATCCCCCAGCTCAAATTCAAAATCGATACTCTGAACCAGATAACCGTGACTGGCGTGGCCGAACTGCGCAACCTCCGGCCAACACAGATGAGAGGTCTTGGGATAATCTCAAGGACAGAGAACCTGGCAATACTATTCAGGCTAATCGTCAAGATCAACCGTTCCCTCGTAATAACCAAGGGGGAGGACCTGCTCCTACTCTAGTCAAAGCTGAGGTACCATGGTCTGCTAGAAGGGGAAGTCTCTCTGACAAGGATCGTGTCTTAAAGACTGTTAAAGGGATACTAAACAAGTTGACTCCTGAGAAATTTGATCTTCTGAAGGGTCAGTTGATCGATTCTGGAATTACATCAGCTGATATATTGAAGGGAGTCATTTCATTGATATTTGATAAGGCTGTGCTAGAACCAACATTCTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGATGGGAAAGAAATAACTTTTAAGAGAGTACTCTTGAATAACTGCCAGGAAGCTTTTGAAGGTGCTGGTAAACTGAGGGAAGAATTGGCGCAGATGACTTCCCCTGAGCAGGAGTTGGAGCGACGTGACAAGGAAAGACTTGTCAAAATTCGTACCCTAGGAAACATTCGTTTAATCGGTGAGCTGCTGAAGCAAAAAATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGGCCTTCTGACAGCAAGGAGGTCTGTCCAGCTGAGGAAAATGTTGAAGCCATTTGTCATTTTTTCAACACTATTGGCAAGCAGCTTGATGAAAGTCCAAAATCACGACGCATAAATGATATTTACTTTAAACGGTTGAAAGAATTGAGCACCAATCCTCAACTTGTACCGCGGATGAGATTCATGGTTCGTGATGTTATAGATTTGCGTGCTAGTAACTGGATTCCAAGACGGGAAGAGGTTAAGGCAAAAACCATCAGTGAAATCCATAATGAGGCAGAAAAGAATCTTGGGTTGCGTCCAGGCGCCACTGCAGTTATGAGAAACACCCGTGTGTCTGGTGTTCAAGGTAATACGGGTGTTGGGGGCTTTCCCATTGCCCGACCTGGTACAGGAGGTTTAATGCCTGGGATGCCAGGTGCCAGGAAGATGCCTGGGATGCCTGGTATTGATAATGATAACTGGGAGGTGCCTAGAACTAGATCTATGCCAAGAGGAGACACGTCCGTCACACAAGTTGGAGGGCGTGGCCAATCTCCTTTCCTTTCCAAGCCATCAGCTCTAAACTCAAAGTTACTGCCTCAAGGTAGTAGTGGTCTTTTAAGTGGGAAGAATAGTGCCCTGGTGCACGGAGGTGGCACTCCTGTTCGTCCATCAGACCTTGCTTCAGGTACGGAGCCTACACCTCAAATCCCTTCCCCTGTTAAACCTGTTTCTGCCGTATCCCCTGAGAAGCCACAGGCCCCAGCTGCAAGTTTGAATATCGATTATCTTCACCGCAAAACTGTCTCTCTTATAGAAGAATACTTCATTGTTCGAAGTTTTGACGAGGCATTGCAGTGTGTGGAGGAACTGAAAGCTCCAACTTATTACCCAGAGGTTGTCAAGGAAGCCATTTCCCTTGGACTAGAGAGAAATCCTCCATGTGTTGAACCTGTTGCCAAACTTATCGAGCATCTGTTTATCAAGAAGATTCTCTCAGCTAGAGACATAGGGACTGGATGTTTGTTATTTGCTTCTCTGCTTGATGATATTGGTATAGATTTACCTAAAGCACCAGGTAACTTTGGTGAGATAATAGGGAAACTAGTTTCGGCTGGGGGTTTAGACTTTAAGGTGGTGAGAGAAATTCTTAAGAAGGTGGGTGATGACTACATCCAGAAAGCTATATTCAACTCTGCAGTGCAGTCAACCGGCCAAGCTGTGTTGGATTCACAAGCATCTGATATTGAGGCATGCCAGGCTCTGTTCGAGTGA 2340 0.4517 MQQGDQTVLSLRPGGGRGNRLLGPRFDSSSSNSSINPAFGSFSSDLSLLRPHGAASSHFAFKVGDSQFEGRERVRYTKEELLEIRKTVEETPDDILKLRHDIDAELFGEDQSWGHVENNPPAQIQNRYSEPDNRDWRGRTAQPPANTDERSWDNLKDREPGNTIQANRQDQPFPRNNQGGGPAPTLVKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKGVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPDGKEITFKRVLLNNCQEAFEGAGKLREELAQMTSPEQELERRDKERLVKIRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPSDSKEVCPAEENVEAICHFFNTIGKQLDESPKSRRINDIYFKRLKELSTNPQLVPRMRFMVRDVIDLRASNWIPRREEVKAKTISEIHNEAEKNLGLRPGATAVMRNTRVSGVQGNTGVGGFPIARPGTGGLMPGMPGARKMPGMPGIDNDNWEVPRTRSMPRGDTSVTQVGGRGQSPFLSKPSALNSKLLPQGSSGLLSGKNSALVHGGGTPVRPSDLASGTEPTPQIPSPVKPVSAVSPEKPQAPAASLNIDYLHRKTVSLIEEYFIVRSFDEALQCVEELKAPTYYPEVVKEAISLGLERNPPCVEPVAKLIEHLFIKKILSARDIGTGCLLFASLLDDIGIDLPKAPGNFGEIIGKLVSAGGLDFKVVREILKKVGDDYIQKAIFNSAVQSTGQAVLDSQASDIEACQALFE 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05286 779 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 59 770 IPR045208 GO:0003743
Trre16g05286 779 SUPERFAMILY ARM repeat 201 436 IPR016024 -
Trre16g05286 779 Pfam MA3 domain 620 731 IPR003891 -
Trre16g05286 779 Gene3D - 199 435 - -
Trre16g05286 779 Pfam MIF4G domain 207 434 IPR003890 GO:0003723|GO:0005515
Trre16g05286 779 MobiDBLite consensus disorder prediction 158 178 - -
Trre16g05286 779 SUPERFAMILY ARM repeat 618 758 IPR016024 -
Trre16g05286 779 MobiDBLite consensus disorder prediction 1 33 - -
Trre16g05286 779 MobiDBLite consensus disorder prediction 111 184 - -
Trre16g05286 779 ProSiteProfiles MI domain profile. 618 740 IPR003891 -
Trre16g05286 779 MobiDBLite consensus disorder prediction 525 565 - -
Trre16g05286 779 MobiDBLite consensus disorder prediction 507 606 - -
Trre16g05286 779 SMART ma3_7 619 731 IPR003891 -
Trre16g05286 779 Gene3D - 612 773 - -
Trre16g05286 779 FunFam Eukaryotic translation initiation factor isoform 4G-2 198 435 - -
Trre16g05286 779 SMART if4_15 207 434 IPR003890 GO:0003723|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05286 Trre-Chr16 56110651 56116996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05286 1 777 Eukaryotic Initiation Factors Gene Family AT5G57870 63.304 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05286 K03260 - gmx:100781275 1199.5