Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05267 ATGTTGAGTGGAGAGCTTCCATCTAAGATTATATGTAATTTTCTACAATTACAATTCCTCTACTTATCATATAACAATTTTGTTAGCCATGATAGTAACACTAACCTTGAACCTTTCTTTGCTTCTTTCATGAATTCATCTAACTTTCAAGAACTCGAATTGGCCGGAAACAACCTCGGTGGGAAGCTACCTTATATTATTGGTAATCTTCCTACAAACATGCAACATATTCACCTACAAGAGAATCTCATACATGGATCTATACCTCCCCACATTTCCAACCTTGTCAATTTGACTTTCTTAAAGTTGTCAAGTAACCGAATAAACGGAACAATCCCTCACAGTCTATGCAAGATTGTTAGGCTAGAGAGAAATTATTTGTCAGATAATTATCTATCTGATGAGATTCCTTCAACTCTCGGCGACAACAAGCATCTTGGACTTCTTGACTTGTCAAGAAACAAGCTTTCACCGGATAGTTTCGCAAACCTCCCTCAGTTAAGAAGGCTTTTACTTTATGACAATAACCTTTCTGGAATAATTCCACCAAGTCTAGGAAAATGTGTCAATTTGGAGATTCTAGATTTGTCTCACAACAAGATCATAGGGATGATTCCTTCAGAAGTTGCAGCATTAACTAGCTTGAAACTGTACTTGAATTTATCAAACAATGAGTTACAAGGTCCTTTACCATTAGAACTAAGCAAAATGGACATGGTACTAGCTATTGATATATCTATGAATAATCTCTCTGGTAGAGTTCCACCACAACTTGAAAATTGCATAGCAATAGAGTATCTCAATCTTTCTGGAAATGTTTCAAACAAAGGAGCATTTTCATCTTTAACCATAAATTCTTTTCTAGGAAACAATGATCTCTGTGGTCCGGTTAATGGCATGAAACAATGTCATGGGAAAAAAAGTTATCATTTGGTGTTTTTGTTAGTTCCTGTGTTACTATTTGGCACACCTATGATATGCATATGTAGGAACTCCATCATAATCAAGTCAAAAATGAGAAAGAAACTGCGAGTCGTTACTGGATGCGACTCGGAAGATGAAACCAAAGAGCTGAAGTATCCTAGAATTTCATATAGACAACTTAGAGAAGCCACTGGAGGGTTCAATGCTTCAAGTCTCATCGGTTCAGGTCGGTTCGGTCGGGTTTACAAAGGTGTACTCTTAGATAATTCAAGAGTAGCTGTGAAGGTATTGGATACAAGAACAGATGGTGAAATATCATGGAGCTTTAGAAGGGAATGTCAAATTCTTAAAAAGATAAGGCATATAAATTTAATAAGGATCATCACAATTTGCAATAAACCAGAATTTAAGGCTCTTGTTCTTCCACTGATGTCAAATGGTAGTCTTGAAAAACACCGATATGATCCAAACCTTGAGTTAAGCCAGAGATTGGATGTGATTCAATTGTTCAACACATGGCTTGTTATTTGGCTCAGTTGGTTATATAGCTCCAGAACTCACTCTAATTTCTTGGACAAGACAAAATATGGAATGGGAAAACATGCTTCAATTGAGGGTGATGTTTACAGTTTTGGAGTAATTCTGTTAGAAATAGTGACAGGTAGACGCCCTACCGATGTCCTAATCCATAAAGGCTTTAGCTTGCATGATTGGGTTAAGAGACAATACACGCAACCAGACAAGCTTAAAAACATTGTTGAAAAAGCACTTCAAAGGTGCCGTCTTTCTTGTGTGCCAAGTCATGATACCAAAGGTTTGGAAGATGTTATGTTGGAACTCATTGAGCTAGGGATAATCTGCACACAACAGAACCCTTCAACAAGACCAACCATGATAGATGTAGCACAAGAGATGGGGAGGTTGAAGGATTATCTCATTAATTCTTTTAGAAGAGAAGATAATTTAATTGAAAATTAA 1902 0.3675 MLSGELPSKIICNFLQLQFLYLSYNNFVSHDSNTNLEPFFASFMNSSNFQELELAGNNLGGKLPYIIGNLPTNMQHIHLQENLIHGSIPPHISNLVNLTFLKLSSNRINGTIPHSLCKIVRLERNYLSDNYLSDEIPSTLGDNKHLGLLDLSRNKLSPDSFANLPQLRRLLLYDNNLSGIIPPSLGKCVNLEILDLSHNKIIGMIPSEVAALTSLKLYLNLSNNELQGPLPLELSKMDMVLAIDISMNNLSGRVPPQLENCIAIEYLNLSGNVSNKGAFSSLTINSFLGNNDLCGPVNGMKQCHGKKSYHLVFLLVPVLLFGTPMICICRNSIIIKSKMRKKLRVVTGCDSEDETKELKYPRISYRQLREATGGFNASSLIGSGRFGRVYKGVLLDNSRVAVKVLDTRTDGEISWSFRRECQILKKIRHINLIRIITICNKPEFKALVLPLMSNGSLEKHRYDPNLELSQRLDVIQLFNTWLVIWLSWLYSSRTHSNFLDKTKYGMGKHASIEGDVYSFGVILLEIVTGRRPTDVLIHKGFSLHDWVKRQYTQPDKLKNIVEKALQRCRLSCVPSHDTKGLEDVMLELIELGIICTQQNPSTRPTMIDVAQEMGRLKDYLINSFRREDNLIEN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05267 633 SUPERFAMILY Protein kinase-like (PK-like) 357 613 IPR011009 -
Trre16g05267 633 Gene3D Transferase(Phosphotransferase) domain 1 501 629 - -
Trre16g05267 633 ProSiteProfiles Protein kinase domain profile. 375 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05267 633 Pfam Leucine rich repeat 165 226 IPR001611 GO:0005515
Trre16g05267 633 Gene3D Ribonuclease Inhibitor 1 311 IPR032675 -
Trre16g05267 633 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 503 613 - -
Trre16g05267 633 FunFam Leucine-rich repeat receptor protein kinase EMS1 40 139 - -
Trre16g05267 633 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 158 246 - -
Trre16g05267 633 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Trre16g05267 633 Pfam Protein kinase domain 377 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05267 633 Gene3D Phosphorylase Kinase; domain 1 346 450 - -
Trre16g05267 633 SUPERFAMILY RNI-like 7 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05267 Trre-Chr16 55958401 55960999 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05267 2 625 Receptor kinase-like Gene Family AT3G47570 31.181 1.54e-77 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre16g05267 Pkinase 5.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05267 - - tpra:123909601 809.29