Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05258 ATGGCGAAAAAATCGCAGAAGCAAATAGAGAAAGACAATGCAAGCAATGATAACAATAATAATCTAAATGCAAGCAACACGGTTACTACTAAGGCGAAACGGACTAGGAAAAGTGTTCCGAGAACTAGTCCGCCTCAACGTAGCTCAATATATAGAGGAGTCACTAGGCACCGGTGGACAGGTCGATATGAAGCTCATTTGTGGGATAAGAATTGTTGGAATGAATCTCAAAACAAGAAAGGAAGACAAGGTGCTTATGATAATGAGGAGACTGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATACCATTATTAATTTTCCGTTATCAAACTATGAGAAAGAACTGATTGAAATGGAGAATCAATCAAGGGAAGAGTATATTGGATCCTTAAGAAGGAAAAGCAGTGGTTTTTCTAGGGGAGTTTCTAAATACAGAGGTGTTGCAAGACATCATCATAATGGAAGATGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAGTATCTTTATCTTGGAACCTATGCTACACAAGAAGAAGCAGCTACAGCTTATGACATGGCAGCTATTGAATACCGTGGGCTTAATGCTGTTACCAATTTTGATCTAAGCCGTTATATTAAGTGGCTTAAGCCCAACAACAACAGCAGCAATGATATTGATAATAACAAGTCTAATATTAATCTTTGTGACATTAACTCTAACTATACTACCAATGACCAAAACTCTAATGAAGAATTGGAATTTAGCCTCCTAGAAAATGAGACATTATCACTCAATAATTCTATTGATGAATCCACATTGGTTCAACCTCGACCAACTAGTGCCACGTCAGCCTTAGAGCTTTTGCTTCAATCATCAAAGTTTAAGGAAATGGTGGAAATGGCATCTATGACAACAAATGTGTCAACAACTTTGGAGTCTGATCAATTGTCACAATGTGCATTTCCTGATGACATTCAAACTTACTTTGAATATGAAGATTTCAATGATGGTACCATATTGGATGATCTCAACTCCATTGTGCCTATGTTCCACTTTGAGGGTACTGAGATTTTATAA 1077 0.376 MAKKSQKQIEKDNASNDNNNNLNASNTVTTKAKRTRKSVPRTSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDNEETAAHAYDLAALKYWGQDTIINFPLSNYEKELIEMENQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNSSNDIDNNKSNINLCDINSNYTTNDQNSNEELEFSLLENETLSLNNSIDESTLVQPRPTSATSALELLLQSSKFKEMVEMASMTTNVSTTLESDQLSQCAFPDDIQTYFEYEDFNDGTILDDLNSIVPMFHFEGTEIL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05258 358 SUPERFAMILY DNA-binding domain 148 209 IPR016177 GO:0003677
Trre16g05258 358 ProSiteProfiles AP2/ERF domain profile. 50 113 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 ProSiteProfiles AP2/ERF domain profile. 149 207 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 SMART rav1_2 149 213 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 SMART rav1_2 50 119 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 SUPERFAMILY DNA-binding domain 49 115 IPR016177 GO:0003677
Trre16g05258 358 Pfam AP2 domain 148 199 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 Pfam AP2 domain 50 105 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 MobiDBLite consensus disorder prediction 1 53 - -
Trre16g05258 358 CDD AP2 49 115 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 FunFam AP2-like ethylene-responsive transcription factor 49 115 - -
Trre16g05258 358 Gene3D AP2/ERF domain 50 115 IPR036955 GO:0003700|GO:0006355
Trre16g05258 358 Gene3D AP2/ERF domain 148 209 IPR036955 GO:0003700|GO:0006355
Trre16g05258 358 CDD AP2 148 209 IPR001471 GO:0003700|GO:0006355
Trre16g05258 358 FunFam AP2-like ethylene-responsive transcription factor 148 209 - -
Trre16g05258 358 MobiDBLite consensus disorder prediction 12 33 - -
Trre16g05258 358 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 20 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05258 Trre-Chr16 55909553 55912184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05258 46 211 AP2-EREBP Transcription Factor Family AT5G57390 72.189 3.93e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g05258 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05258 K09285 - gmx:100793339 487.648