Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05257 ATGCCTCTCAACGTTCTTCTTCTTCTCTTGTTCCTCTTCCTCTCTCCACAGCCTCTCTTTTCCGCTTCATTGCCTCGTAACCCCGAAGTGGAAGCTTTGATGAGTATTAAAGAAGCTTTAAATGATCCACATGGTGTATTAAGCAACTGGGATGAATTCTCTGTTGACCCTTGTAGTTGGCCCATGATTACTTGCTCTTCTGATTACTTCGTTATTGGCTTGGGTGCTCCTAGTCAAAATCTCTCTGGAACTTTATCTTCAGCAATTGCAAATTTAACAAATCTTAAACAAGTTTTACTGCAGAATAACAACATTTCAGGCAAAATACCACCGGAACTTGGTAACCTTCCCAAGCTTCAGACTTTAGATCTTTCAAATAACAGATTCTCTGGTTTCATTCCATCTTCTCTCAGTCAATTGAATAGTCTTCAGTACTTGAGGTTGAATAACAATAGCTTATCTGGACCATTTCCTGTTTCACTGGCAAAAATCACACAACTTGCTTTCTTGGACTTGTCTTATAACAATCTTAGTGGACCATTGCCCAAGTTTCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAATTTGTCTAAGCATCTCTATTGAAGGCTGTTCTGGATCAGCGACCCTTATGCCTGTTCCTTTTTCTCAAGCCTCATCAGAAGGAAAACACAAATCCAAAAAACTAGCAATTGCTCTTGGGGTCAGCTTTAGTTTTGTTTCTCTTGTCATCCTGATTTTGGGTCTCTTTTGGTATAGAAAGAAAAGACAGCATGGAGCCATCTTGTATATTGGTGATTATAAAGAAGAGGCAGTTGTTAGCTTAGGAAATCTCAAAAGTTTCGGTTTCAGAGAGCTCCAACATTCAACGGATAATTTCAGTTCCAAGAATATACTTGGTGCTGGGGGTTTTGGCAATGTTTATAGGGGGAAGCTTGGAGATGGCACAATGGTAGCTGTGAAAAGGCTGAAAGATGTAAACGGTAGTGCTGGCGAGTTACAGTTCCAAACAGAATTGGAGATGATCAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTGCTAACGAAAAACTTCTGGTTTATCCTTATATGTCTAATGGCAGTGTGGCCTCCAGGCTTAGAGGAAAACCAGCTTTAGATTGGAATGCAAGAAAGAGGATAGCAATAGGAGCTGCAAGGGGACTTTTGTATCTTCATGAACAATGTGATCCGAAGATAATACACAGAGATGTAAAGGCTGCCAATGTGCTTCTTGATGACGACTATGAGGCCATTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGATCATGCTGATTCCCATGTCACCACTGCTGTCCGTGGTACTGTTGGGCACATTGCTCCGGAGTACCTCTCCACTGGCCAATCATCTGAGAAAACTGATGTGTATGGATTCGGAATTCTCTTGTTAGAGCTTATAACTGGAATGACAGCTCTCGAGTTTGGAAAAACCTTGAATCAAAAAGGTGCTATGCTTGAGTGGGTTAGGAAAATACAGCAAGAAAAGAAGGTTGAACTGTTGGTGGACAAAGAATTAGGGAGCAACTATGATAGAATTGAGGTTGGGGAAATGCTGCAAGTAGCTTTACTATGTACTCAATATTTGACAGCTCATCGTCCAAAAATGTCGGAAGTGGTCCGAATGCTCGAAGGAGACGGACTTGCTGAGAAGTGGGCATCAACACATAATTATGGTAACAACTGCTGGAGCCATAGTCACAGCAACAGTAGTAGCAATAGCTCATCTCGTCCTACCTCTACTTCAAAACATGATGACAATAATGTTCATGATCGTTCTGGCATGTTTGGCATGGCAATGGATGATGATGATGATCAGTCTTTGGATTCCTATGCTATGGAACTTTCTGGTCCTAGATAA 1923 0.415 MPLNVLLLLLFLFLSPQPLFSASLPRNPEVEALMSIKEALNDPHGVLSNWDEFSVDPCSWPMITCSSDYFVIGLGAPSQNLSGTLSSAIANLTNLKQVLLQNNNISGKIPPELGNLPKLQTLDLSNNRFSGFIPSSLSQLNSLQYLRLNNNSLSGPFPVSLAKITQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLICLSISIEGCSGSATLMPVPFSQASSEGKHKSKKLAIALGVSFSFVSLVILILGLFWYRKKRQHGAILYIGDYKEEAVVSLGNLKSFGFRELQHSTDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGELQFQTELEMISLAVHRNLLRLIGYCATANEKLLVYPYMSNGSVASRLRGKPALDWNARKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDDYEAIVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVYGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQQEKKVELLVDKELGSNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASTHNYGNNCWSHSHSNSSSNSSSRPTSTSKHDDNNVHDRSGMFGMAMDDDDDQSLDSYAMELSGPR 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05257 640 MobiDBLite consensus disorder prediction 604 620 - -
Trre16g05257 640 MobiDBLite consensus disorder prediction 585 603 - -
Trre16g05257 640 Gene3D Phosphorylase Kinase; domain 1 266 371 - -
Trre16g05257 640 SUPERFAMILY Protein kinase-like (PK-like) 277 565 IPR011009 -
Trre16g05257 640 SMART serkin_6 295 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05257 640 ProSiteProfiles Protein kinase domain profile. 295 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05257 640 FunFam Somatic embryogenesis receptor kinase 1 266 371 - -
Trre16g05257 640 Gene3D Ribonuclease Inhibitor 26 208 IPR032675 -
Trre16g05257 640 FunFam Somatic embryogenesis receptor-like kinase 1 372 583 - -
Trre16g05257 640 Pfam Protein tyrosine and serine/threonine kinase 298 564 IPR001245 GO:0004672|GO:0006468
Trre16g05257 640 Pfam Leucine rich repeat 117 177 IPR001611 GO:0005515
Trre16g05257 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Trre16g05257 640 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Trre16g05257 640 FunFam Putative LRR receptor-like serine/threonine-protein kinase 26 208 - -
Trre16g05257 640 Gene3D Transferase(Phosphotransferase) domain 1 372 582 - -
Trre16g05257 640 MobiDBLite consensus disorder prediction 585 640 - -
Trre16g05257 640 SUPERFAMILY L domain-like 27 199 - -
Trre16g05257 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 574 - -
Trre16g05257 640 PRINTS Leucine-rich repeat signature 164 177 - -
Trre16g05257 640 PRINTS Leucine-rich repeat signature 119 132 - -
Trre16g05257 640 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05257 Trre-Chr16 55880096 55883874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05257 27 640 Receptor kinase-like Gene Family AT5G16000 65.273 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre16g05257 PK_Tyr_Ser-Thr 9.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05257 - - gmx:100775565 1025.77