Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05251 ATGTCGTCGGCTCTTCCCATGACCGAAATGTCGTCCTTCTTTAGTTACGAAGGACGCCTTAATGATGGAATGTTGGTAAAAAAACATGATGGAGTTGGCTTCGCAAACAAGGATGGTCGTTTTTGTCTTGCATTGTCAATGGCTGTTAAAACCATGATGAAGGGTGACAGAGTGACTTTGACCGTGAAGCCTCAATATGGATTTCGTGAAAACGGCAAGTCAACTCACAGCAATGAAGGTTCACTTCCACTTCCACCTAATTCAACATTGCAAGTTACTCTAGAGTTAGTTTCTTGGAGGACTGCTTCTGAAGTAACCGTTGATAAAAAGGTTGTCAAGGAAGGAAAAGGATACGAGTATTCAAATGAGGGAGCTGTTGTAAAATTGAAACTAATTGGTAAGCTGCAAGATGGCAATGTATCTTTTAAGAAGGGCTACAATGATGGTGAAGCAGAGCTGTTTGAATTTAAAACAAACGAGGTAAACCAAATGATTGATGAGCTTGATAGAGCTGTAAGCACCATGAAGAAAGGTGACGTAGCATTGTTGACTATTGAGCCTGAATATTCTTTTGGTTCATCGGAGTCTCAGAATGAATTAGGTGTGGTTCCTCCTAATTCAACCTTGTATTATGATGTTGAACAAGTTTCAATTGTTGAGAATAAAGGGTCATGGGACATGATTAGCGTTGCAGAGAAGCTACCAGTTTATAGGGAACATGCTAGTGCTGTTAAAACAATTGACCAGATTGAGTATGATTACAAGTTCCGTGTGATGAAAAGGGAGACTCCTGATATTGGAGGTGGAATAGATGACATAATCGCAAGTTTAGAGAAGATGAACAAATTGTTGAGGGCTAAGAAGGATAAGGATGCATATGCTGAGAAGGATAAGGATGCATATGCAAACTTTTATGGGAGATTGTACTTCATTACCAAAACAACACTCCATCCTTTGAACTTACCAAAACAACACTCCATTTCTCTTTTGTTTCAACAAAATTTCTTCAGTAAAGATTTGGTGGAAAAAAATTGA 1035 0.3884 MSSALPMTEMSSFFSYEGRLNDGMLVKKHDGVGFANKDGRFCLALSMAVKTMMKGDRVTLTVKPQYGFRENGKSTHSNEGSLPLPPNSTLQVTLELVSWRTASEVTVDKKVVKEGKGYEYSNEGAVVKLKLIGKLQDGNVSFKKGYNDGEAELFEFKTNEVNQMIDELDRAVSTMKKGDVALLTIEPEYSFGSSESQNELGVVPPNSTLYYDVEQVSIVENKGSWDMISVAEKLPVYREHASAVKTIDQIEYDYKFRVMKRETPDIGGGIDDIIASLEKMNKLLRAKKDKDAYAEKDKDAYANFYGRLYFITKTTLHPLNLPKQHSISLLFQQNFFSKDLVEKN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05251 344 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 9 100 IPR001179 GO:0003755
Trre16g05251 344 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 106 249 - -
Trre16g05251 344 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 124 219 IPR001179 GO:0003755
Trre16g05251 344 Gene3D - 3 100 IPR046357 GO:0003755
Trre16g05251 344 SUPERFAMILY FKBP-like 14 105 - -
Trre16g05251 344 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 120 214 IPR001179 GO:0003755
Trre16g05251 344 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 15 96 IPR001179 GO:0003755
Trre16g05251 344 SUPERFAMILY FKBP-like 107 229 - -
Trre16g05251 344 Gene3D - 101 240 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05251 Trre-Chr16 55841737 55847584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05251 109 228 Calmodulin-binding Proteins AT3G25230 35.000 3.68e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05251 K09571 - gmx:100803189 276.559