Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05246 ATGGCAATGGCTGCTGCTATGCGACGCGAAGGGAAGCGTTTGGCTCCTCTCGCCTCTTCTCAAACAATCACGAACACTCTCCGATCTTCTCTCACCTCTCCAGACCAGTCTTCTATTGGAGGAGCACGTTCAATTTCCACTCAAATTGTGAGAAATCGCATGAAGAGTGTGAAAAATATCCAGAAAATTACTAAGGCTATGAAGATGGTTGCTGCTTCTAAACTACGAGCTGTTCAAACTAGGGCTGAAAACTCACGTGGTTTGTGGCAGCCATTTACGGCTCTTCTCGGTGATGCCACAAGTGTTGATGTCAAGAAGAATGTTGTTGTTACTGTTTCTTCGGACAAAGGTCTTTGTGGTGGAATCAACTCCACATCTGTCAAGATAAGCAGGGTATTGAGCAAGTTGAATTCTGGACCTGATAAAGAGACAAAGTACGTCATATTGGGAGAGAAGGCTAAGGCTCAGTTGATTCGTGACTCAAAGAAAGACATTGCACTCAGCTTGACTGAGTTGCAAAAGAATCCTCTGAACTATACTCAGGTGTCTGTCTTGGCTGATGACATTCTAAAGAACGTGGAGTATGATGCACTGAGGATTGTTTTCAACAAATTTCATTCGGTTGTACAATTTATTCCAACGGTGTCAACTGTACTATCCCCCGAGATTGTTGAAAGAGAGGCTGAAGCTGGAGGAAAGCTCGGTGAACTGGATTCCTACGAGATTGAAGGGGGTGAGACAAAATCAGAGGTTCTTCAGAATCTGTCCGAGTTCCAGTTTTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACTTATAATAGAACTCGTCAAGCATCAATCACCACCGAGTTGATTGAGATTATCTCTGGAGCATCAGCATTGACAGGTTAA 978 0.4479 MAMAAAMRREGKRLAPLASSQTITNTLRSSLTSPDQSSIGGARSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDATSVDVKKNVVVTVSSDKGLCGGINSTSVKISRVLSKLNSGPDKETKYVILGEKAKAQLIRDSKKDIALSLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVQFIPTVSTVLSPEIVEREAEAGGKLGELDSYEIEGGETKSEVLQNLSEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05246 325 PRINTS ATP synthase gamma subunit signature 196 213 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 PRINTS ATP synthase gamma subunit signature 270 289 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 PRINTS ATP synthase gamma subunit signature 301 322 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 PRINTS ATP synthase gamma subunit signature 104 123 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 FunFam ATP synthase subunit gamma 70 282 - -
Trre16g05246 325 FunFam ATP synthase gamma chain 278 320 - -
Trre16g05246 325 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g05246 325 CDD F1-ATPase_gamma 46 320 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 Gene3D ATP synthase, gamma subunit, helix hairpin domain 50 320 - -
Trre16g05246 325 PIRSF ATP_synthase_gamma 11 323 - -
Trre16g05246 325 Gene3D - 70 282 - -
Trre16g05246 325 NCBIfam ATP synthase F1 subunit gamma 46 323 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 Pfam ATP synthase 48 323 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 48 323 IPR035968 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 PANTHER ATP SYNTHASE GAMMA CHAIN 28 323 IPR000131 GO:0015986|GO:0045261|GO:0046933
Trre16g05246 325 ProSitePatterns ATP synthase gamma subunit signature. 309 322 IPR023632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05246 Trre-Chr16 55804813 55808831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05246 50 323 Primary Pumps ATPases AT1G15700 30.462 1.44e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05246 K02136 - gmx:100813657 536.184