Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05237 ATGGGTTGTTTAGATGGTTATCTTCCAGTAATGGTTATGATAGGATTACAATTTCATTATGCATTACTTGCAATCTTTACAAGAGCTGCTCTATTAGATGGATTGACTCCCACTGTCTTTGTAGTTTATAGGCAAGGCATAGCCACTTTGGCATTGGCACCTATTATCATTTCCTCTAATAAACGGAGACAATCTTTGAAGACTTCATTAGGATTAAAGAGTTTCTCTTTAATGTTTATCACCTCACTTGTTGGGGTTACATTAAATCAGAATGCATATTTTAGTGGTTTATTCTATGCATCTTCTACAGCAGCAACTGCTATGAGTAATTTGATACCTGCATTAACTTTTGTATTTGCAGCAATTTTGGGATATGAGAAAATTAATCTTCGAAGTTTAAGAAACGCGGCCAAGATATTAGGGACAATTTGTTGTGTCAGTGGAGCCTTAACAATGGCATTTCTCAAAGGAAATAAGCTGTTACACATGGAGTTCTTTCCTGATTCTAAACATCTCACTGCAAGTGGAGATGATACTTGGATTTTTGGTTGTCTATTGCTCTTAGCAAGTAGTGTTTTTTGGTCATGTTGGATGATCATGCAGGTACCGATTTCTTCGTCCTGTCCAGATCATATATTGTCGACTTTTTGGATGTGTCTTTTCGCTACAATACAGTCAGCTATATTTGCATTGCTCAAAGAGCAGAATCTTCAATCATGGATATTAAATTCACCTTTACAAATTTCATGCAGTTTATATGCAGGAATTGGAATTGCTGTTAGCTTCTTCATTCAATCTTGGTGCATCTCAGAAAGAGATCCTCTATACTGTGCAATGTTCAATCCTCTAGCAACTGTCATCACAGCTTTGGTATCTGCTATATTCCTACAAGAAGAGCTACACATTGGAAGTTTGGTAGGAGCTATTGGAGTGATCACTGGTTTGTATATTGTGTTATGGGGTAAAGCGAAAGACTTTTATGGGAGAAAACAAGAGCTACAACAATCAAACATGGTGGATGATGAAATAAGTAATAGGATAGTTTTGGAAGAACCACTTCTAGCATAG 1068 0.3661 MGCLDGYLPVMVMIGLQFHYALLAIFTRAALLDGLTPTVFVVYRQGIATLALAPIIISSNKRRQSLKTSLGLKSFSLMFITSLVGVTLNQNAYFSGLFYASSTAATAMSNLIPALTFVFAAILGYEKINLRSLRNAAKILGTICCVSGALTMAFLKGNKLLHMEFFPDSKHLTASGDDTWIFGCLLLLASSVFWSCWMIMQVPISSSCPDHILSTFWMCLFATIQSAIFALLKEQNLQSWILNSPLQISCSLYAGIGIAVSFFIQSWCISERDPLYCAMFNPLATVITALVSAIFLQEELHIGSLVGAIGVITGLYIVLWGKAKDFYGRKQELQQSNMVDDEISNRIVLEEPLLA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05237 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
Trre16g05237 355 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 323 - -
Trre16g05237 355 Pfam EamA-like transporter family 10 150 IPR000620 GO:0016020
Trre16g05237 355 Pfam EamA-like transporter family 182 319 IPR000620 GO:0016020
Trre16g05237 355 PANTHER WAT1-RELATED PROTEIN 8 325 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05237 Trre-Chr16 55764720 55767680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05237 1 355 Nodulin-like Gene Family AT4G30420 44.837 1.90e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05237 - - gmx:100817369 534.258