Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05236 ATGCAGGTACCGATTTCTTCATCCTGTCCGGATCATATATTGTCGACTTTTTGGATGTGTCTTTTTGCTACAGTACAGTCAGCTATATTTGCACTGATCAAAGAGCAGAATCTTCAATCATGGATAATAAATTCACCTTTACAAATTTCATGCAGTTTATATGCAGGAATTGGAATTGCTGTTAGCTTCTTCATTCAATCTTGGTGCATCTCAGAAAGAGATCCTCTATACTGTGCAATGTTCAACCCTCTAGCAACTGTCATCACAGCTTTGGTTTCTGCTACATTCCTACAAGAAGAGCTATACATTGGAAGTTTGGTAGGGGCTATTGGAGTGATCACTGGTTTGTATATTGTTTTATGGGGAAAAGCAAAAGACTTTGATGGGAGTAAACAAGAGCTACAACAATCAAACATGGTGGATGATGAAATAAGTAATAGGATAGATTTGGAAGAACCACTTCTAGCAGAGAAGTCAGAATATGTAAAAGAGAGCAAGATGGAGCCCTAA 510 0.3804 MQVPISSSCPDHILSTFWMCLFATVQSAIFALIKEQNLQSWIINSPLQISCSLYAGIGIAVSFFIQSWCISERDPLYCAMFNPLATVITALVSATFLQEELYIGSLVGAIGVITGLYIVLWGKAKDFDGSKQELQQSNMVDDEISNRIDLEEPLLAEKSEYVKESKMEP 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05236 169 PANTHER WAT1-RELATED PROTEIN 2 127 IPR030184 GO:0016020|GO:0022857
Trre16g05236 169 SUPERFAMILY Multidrug resistance efflux transporter EmrE 18 124 - -
Trre16g05236 169 Pfam EamA-like transporter family 12 120 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05236 Trre-Chr16 55753726 55754653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05236 1 158 Nodulin-like Gene Family AT4G30420 42.604 1.90e-42 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05236 - - psat:127138496 270.781