Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05235 ATGGGTTGTTTAGATGGTTATCTTCCAGTAATTGTTATGATAGGATTACAATTTCATTATGCATTACTTGCAATCTTTACAAGAGCTGCTCTATTAGATGGATTGACTCCTACTGTCTTTGTAGTTTATAGGCAAGGCATAGCCACTTTGGCATTGGCACCTATCATCATTTCCTCTAATAAACGGAGACAATCTTTGAAGACTTCATTAGGATTAAAGAGTTTCTCTTTGATGTTTATCACCTCTCTTGTTGGGGTTACATTAAATCAGAATGCATATTTTAGTGGTTTATTCTATGCATCATCTACAGCAGCAACTGCTATGAGTAATTTGATACCTGCATTAACTTTTGTATTTGCAGCAATTTTGGGATATGAGAAAATTAATCTTCAAAGTTTAAGAAACGCGGCCAAGATATTAGGGACAATTTGTTGTGTCAGTGGAGCCTTAACAATGGCATTTCTCAAAGGAAATAAGCTGTTACACATGGAGTTCTTTCCTGATTCTAAACATCTCACTGCAAGTGGAGATGATACTTGGATTTTTGGCTGTCTATTGCTCTTAGCAAGTAGTGTTTTTTGGTCATGTTGGATGATCATGCAGGTACCGATTTCTTCGTCCTGTCCAGATCATATATTGTCGACTTTTTGGATGTGTCTTTTCGCTACAATACAGTCAGCTATATTTGCACTGATCAAAGAGCAGAATCTTCAATCATGGATATTAAATTCTCCTTTACAAATTTCATGCAGTTTATATGCAGGAATTGGAATTGCTGTTAGCTTCTTCATTCAATCTTGGTGCATCTCAGAAAGAGATCCTCTATACTGTGCAATGTTCAACCCTCTAGCCACTGTCATCACAGCTTTGGTTTCTGCTACATTCCTACAAGAAGAGCTATACATTGGAAGTTTGGTAGGGGCTATTGGAGTGATCACTGGTTTGTATATTGTTTTATGGGGTAAAGCAAAAGACTTTGATGGGAGTAAACAAGAGCTACAACAATCAAACATGGTGGATGATGAAATAAGTAATAGGATAGATTTGGAAGAACCACTTCTAGCAGAGAAGTCAGAATATGTAAAAGAGAGCAAGATGGAGCCCTAA 1107 0.3695 MGCLDGYLPVIVMIGLQFHYALLAIFTRAALLDGLTPTVFVVYRQGIATLALAPIIISSNKRRQSLKTSLGLKSFSLMFITSLVGVTLNQNAYFSGLFYASSTAATAMSNLIPALTFVFAAILGYEKINLQSLRNAAKILGTICCVSGALTMAFLKGNKLLHMEFFPDSKHLTASGDDTWIFGCLLLLASSVFWSCWMIMQVPISSSCPDHILSTFWMCLFATIQSAIFALIKEQNLQSWILNSPLQISCSLYAGIGIAVSFFIQSWCISERDPLYCAMFNPLATVITALVSATFLQEELYIGSLVGAIGVITGLYIVLWGKAKDFDGSKQELQQSNMVDDEISNRIDLEEPLLAEKSEYVKESKMEP 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05235 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 323 - -
Trre16g05235 368 PANTHER WAT1-RELATED PROTEIN 8 326 IPR030184 GO:0016020|GO:0022857
Trre16g05235 368 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020
Trre16g05235 368 Pfam EamA-like transporter family 182 319 IPR000620 GO:0016020
Trre16g05235 368 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05235 Trre-Chr16 55744658 55746643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05235 1 357 Nodulin-like Gene Family AT4G30420 44.324 1.58e-108 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05235 - - psat:127138496 559.296