Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05223 ATGCGAAATTTGAGTTCACTCAAGAAAGAATTTCTAAGAAAATGGATAAAGGGGCTAAGAAAGTACAACTCTCAAAAGAAGAACATGACCTTGTTGGAGAGGATAAAGGCTATAAAGCTCTCTGCAGATTTAGCCATGGCTTCCACCAAAGACAAAACTACCCTTTGGAGAAAAGCCCTATTTGCAAATATTTCAACAAACATAGATAATGAACAAGACATATTAACAACCTCATCACCACAAAAGGTAATAAGAAAAAACTCGACGAATTCGTACCCTCTTCGAAAAAGGATAACCGGAAGGAGAAAGATCTTGAGAAGAAATCGTACAAAGGAAAGAATCGAGGCGAGTTTTATCGCGATGCGGTTGGTTAAGAAGAGAACAAGGAGGCTGAAGAGTTTGTTACCAGGTGGAAAATTCATGGATAATGCTTGTTTGGTTGATGAAACCCTAGATTATATAGAGTCTTTGAAAGCTCAAGTTGAAGTAATGAGGTGTCTTGTTACTTCCTCTGAGCTCTTCATTAATCCATCGTAA 537 0.378 MRNLSSLKKEFLRKWIKGLRKYNSQKKNMTLLERIKAIKLSADLAMASTKDKTTLWRKALFANISTNIDNEQDILTTSSPQKVIRKNSTNSYPLRKRITGRRKILRRNRTKERIEASFIAMRLVKKRTRRLKSLLPGGKFMDNACLVDETLDYIESLKAQVEVMRCLVTSSELFINPS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05223 178 CDD bHLH_AtIBH1_like 122 168 IPR044549 GO:0006355
Trre16g05223 178 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 6 169 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05223 Trre-Chr16 55638420 55638956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05223 1 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30410 41.899 1.79e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05223 - - pvu:PHAVU_003G151300g 208.764