Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05220 ATGGGAAGAAGGATACTGAATGATGCGTTGAGGAGTATGGTGAATGCTGAGAAAAGAGGAAAAGCTATGGTGGAGCTCAAGCCTATATCCACCGTCATTTCTTCCTTTCTCCAAATCATGAAACACCGCGGATATATCAAGGACTTTCAGGTCTATGATCCCCATAGAGTGGGGAGGATTACAGTCGAACTACAAGGTAGAATTAACGATTGCAAGGCCCTTACATACCGACAAGACCTCAAGGCAAAGGATATCGAAGCTTACAGATTGCGCACTCTTCCGACACATCAGTGGGGTTACGTTGTGATTACAACGCCTGATGGTGTTTTGGATCATGAAGAGGCTGCAAGAAGGAATGTAAGTGGTCAAGTTCTTGGTTACTTTCACTGA 390 0.4462 MGRRILNDALRSMVNAEKRGKAMVELKPISTVISSFLQIMKHRGYIKDFQVYDPHRVGRITVELQGRINDCKALTYRQDLKAKDIEAYRLRTLPTHQWGYVVITTPDGVLDHEEAARRNVSGQVLGYFH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05220 129 Gene3D - 2 68 - -
Trre16g05220 129 Pfam Ribosomal protein S8 6 127 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre16g05220 129 FunFam 40S ribosomal protein S15a 1 68 - -
Trre16g05220 129 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 128 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre16g05220 129 SUPERFAMILY Ribosomal protein S8 3 129 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trre16g05220 129 ProSitePatterns Ribosomal protein S8 signature. 99 116 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trre16g05220 129 Gene3D - 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05220 Trre-Chr16 55610551 55612925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05220 1 129 Cytoplasmic Ribosomal Protein Gene Family AT4G29430 81.395 6.32e-80 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05220 K02957 - gmx:100792186 242.276