Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05212 ATGGGAAGAATTTTTATGCCATTTCAAGGTGACACCTTTATGCCACCATTAGCACAACCACCAATTTCACCATTTCCATCTATCATAGTTTCTAGTCTTCGATCTAATAATAATGCTTTTGGTTTTAACAATAGTGATACCTTAAAGGTTAGTCCAAGTATTCTTATAATCATTATTATTTTAGCTATTGTTTTCTTCATTTCTGGTTTGCTTCATCTCTTAGTTAGATTTCTATGGAGACCTGAGAGTAGAGACCCTGATGAATTAAGTGATGTTACTGTTCTTCAAGGTCAATTGCAACAGCTTTTTCATCTTCATGATGCTGGTGTTGACCAATCTTTCATTGATACACTTCCTGTGTTTCTTTATAAAACTATTATTGGATTGAAAGTGAACCCTTTTGATTGTGCTGTTTGTTTATGTGAATTTGAACTTGAAGATAAGCTTAGATTGTTACCAAAATGTAGTCATGCTTTTCATATGGAATGTATTGATACATGGCTTTTGTCTCATTCTACTTGTCCTCTTTGTAGAGCTAATTTGCTTCATGATTTCAACACAAGTACTAATTGTTCACCTTTAGTTCTTGTTCTTGAATCTGGTAGTGATAGTTCAAGAGAAATTGATCATGAAAGAGAAGCTGAAATTGGTATAGGTAGTAATGTTGTTGGTAGGACTGGTTCTGTAACTTCTGTTAGGTCAACAAATTCTTATCTTGGTTGTCGCGGAGACGGTGAATTCGGAGATGATTCGGCTTCGGTTGAAAACATTCCTGATTCAAATGTTGAAGTTGGTGGTGATGGTGTGGAGAAAGTGGTTACTGTTAAGCTTGGAAAGTATAGGAATGTTGATGGTGGAGGGGAAGGAAGTAGTAGCAACAATGTGGATGATAGAAGGTGTTTTTCAATGGGATCATTTGCTTATATTATGGATGAAACTTCATCATTGCAGGTACCAATTAGAACTCCAATGAAGCAACAATTGAGTAAGAAGAAGAATGTTTTGCCTTTGATTCCAGGACATAGACAAGCAATGTCAGAATGTGATTGTGAATCTAGAAGAGATTTCAAATTTGCAAGCTTTGATTCAGTTAGAACTGAGGATACTGCTGCTGCTAATACTATTGGTAGGAGTAAAAAAGAGAGTTTTTCTATATCAAAGATTTGGCTTAGAGGGAAAAAAGATAAGAGAAATGGTGATGTAGCTGATTCATCTAGAAGGGCTTTTTCATTTAGGTTTCCATTACAAAGTAATGTTGGTGAAGATTTGAAGGTTAAGAATGGTAGATTTCATACAAGGAGTACTGTTTCTGAGATGGATTTTGGAAAATGGGAAAATGGAGTAGCAAGTGAATTTGGTGGTTATGATGAAGAAAGTCAAAGTTGTTATAGTATGGATTCTTCTCAACCTAGAGCACCTTCTTTTGCTAGAAGAACTTTGCTTTGGCTTACTGGAAGACAGAATAAGGTTGTTCATTCATCATCTGCTTCTACCACCCTTTAG 1503 0.3553 MGRIFMPFQGDTFMPPLAQPPISPFPSIIVSSLRSNNNAFGFNNSDTLKVSPSILIIIIILAIVFFISGLLHLLVRFLWRPESRDPDELSDVTVLQGQLQQLFHLHDAGVDQSFIDTLPVFLYKTIIGLKVNPFDCAVCLCEFELEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRANLLHDFNTSTNCSPLVLVLESGSDSSREIDHEREAEIGIGSNVVGRTGSVTSVRSTNSYLGCRGDGEFGDDSASVENIPDSNVEVGGDGVEKVVTVKLGKYRNVDGGGEGSSSNNVDDRRCFSMGSFAYIMDETSSLQVPIRTPMKQQLSKKKNVLPLIPGHRQAMSECDCESRRDFKFASFDSVRTEDTAAANTIGRSKKESFSISKIWLRGKKDKRNGDVADSSRRAFSFRFPLQSNVGEDLKVKNGRFHTRSTVSEMDFGKWENGVASEFGGYDEESQSCYSMDSSQPRAPSFARRTLLWLTGRQNKVVHSSSASTTL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05212 500 SMART ring_2 136 177 IPR001841 -
Trre16g05212 500 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Trre16g05212 500 SUPERFAMILY RING/U-box 130 187 - -
Trre16g05212 500 FunFam RING-H2 finger protein ATL46 97 183 - -
Trre16g05212 500 CDD RING-H2_EL5-like 135 178 - -
Trre16g05212 500 Pfam Ring finger domain 135 178 IPR001841 -
Trre16g05212 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 389 - -
Trre16g05212 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 183 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05212 Trre-Chr16 55544879 55546381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05212 49 497 C3H Transcription Factor Family AT2G18650 46.039 6.49e-102 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05212 - - gmx:100797283 620.542