Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05211 ATGCCTCCTCTTCACCATGCCGATCCCGAACCTAAACCAAACCCTAACCTTCTTTCCCTCTTCCTCAAACCCATCATCATGCTCCTTCTCACCTCCCTCTTCTTCCTTTTCCTCGGTTTCGCCGCTTTTCTCCTTCTTAACCTCTTCCTCCTCGCCGGCGCTCTCCACCGTCTCCGTTTCCGTCCTACTCCAACCCGCCGTCTTCAATCTCCCACCGACGCTTTCCTCCCTCACGAAATCAACAATCTCCCTAATTTCCGTGTCAAAGGATCCGTACCCGTACCCGGACCCGATTCACGATGTGCTGTTTGTTTGGACGGTTTTCGTAATGGTCAGTGGTGTCGAAATCTCGCTGCTTGTGGTCATGTTTTTCACCGTAGATGTATTGACACGTGGCTTCTTAAGGTTGCCACGTGTCCTACTTGTCGTACACCGGTTCGATCCAAACCCGAACCACCTCAATGTTCGGTTTTAGAAGATCAAGGTTCTTCGCAAATTTGGAATTGCTCAAATAATAATTCCAATGGTTTCACCGTTTTATAG 543 0.4917 MPPLHHADPEPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAGALHRLRFRPTPTRRLQSPTDAFLPHEINNLPNFRVKGSVPVPGPDSRCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSKPEPPQCSVLEDQGSSQIWNCSNNNSNGFTVL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05211 180 Pfam Ring finger domain 100 143 IPR001841 -
Trre16g05211 180 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 150 - -
Trre16g05211 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 149 IPR013083 -
Trre16g05211 180 SUPERFAMILY RING/U-box 97 151 - -
Trre16g05211 180 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Trre16g05211 180 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05211 Trre-Chr16 55537273 55537815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05211 12 169 C3H Transcription Factor Family AT2G18670 40.506 2.02e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05211 - - pvu:PHAVU_003G150700g 161.77