Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05194 ATGCAAATGGTGAGTACAAACGCAAACGAGACTGGAGTAATCAAATTAAGAGTCGGGGTCCCTAAGAAAAAAGGTTTTGAACAATTTGTAAATGTAGTTTGGGACTCTCATGAGAACAAGTACAATGTTTCTGGATATTGCATGGATGTTTTCAATGCCGTTGTAAGCAACTTAACTTTCAATGTTTCTCTACAAATTGAATCTTATGACGTTTTTGATGAATCAAAACGCACTGTTGGAACATACCATTCACTTCTCCACCAGATCCCAGCAAAGTATGATGTTGTGGTGGGCGACATAACAATTTTGGCGGATCGTGCACAATTTGTAGATTTTACTCTGCCATATACAGAATTAGGAATTAGAATGTTAGTTCCCGTTGTACATGGAAGGCACCAAACCATGTGGATATTTGTGAAACCCTTTAGCTGGGATCTTTGGTTGAGCATACTCATAATCAACATGCTCGTAGGGTTAGTCATACTCATCATGGAAAGAAACGTACATATTGTTCGTCACCTGGCCGAGAGTTCTCCAGATCGACAACAACTCAACGCAATGACCATTTTATGGTTTCCGATATCACAAGCCATTCTTCCTGAAAGACATGTGGTTGCCAAAAAGTGCTCAAGATTTGTGCTGATGGTTTGGCTACTATTAGCGTTTGTCCTCATGCAAAGTTACACAGCTAATTTGACGTCTATATTGACCGTAGATCAGATACAACCCAGTTTTCTCAGCTTGAATGATCTAAGAAAATATGGATATTATGTTGGATATCAAACCGGTTCTTTCGTTTATGACGTCTTGGTACAACAATTGCAGTTTGATCCCTCCAAGTTGAAGGCATATAACAACATTTATAGCTATCATGACGCTTTGAACCGTGGAAGCCAAGATGGGGGTGTCATAGCTATATTAGACGAAGTTCCCTACCTTAATGCCTATCTTCAAACGTTTGGATCCAATTACATCATAGCTGGTCCAACCCATCGAAGTGAAGGATTTGGCTTTGTATTTCCTTACAACTCCAATCTTACTGCTCACTTTTCAAGAGCAATCTTAAATGTGAGGGAAAATTATCTTATAATGAATCAGATTGAGGAAAAATATTTTGGGAGAATTGAAGGGCTATAA 1137 0.3879 MQMVSTNANETGVIKLRVGVPKKKGFEQFVNVVWDSHENKYNVSGYCMDVFNAVVSNLTFNVSLQIESYDVFDESKRTVGTYHSLLHQIPAKYDVVVGDITILADRAQFVDFTLPYTELGIRMLVPVVHGRHQTMWIFVKPFSWDLWLSILIINMLVGLVILIMERNVHIVRHLAESSPDRQQLNAMTILWFPISQAILPERHVVAKKCSRFVLMVWLLLAFVLMQSYTANLTSILTVDQIQPSFLSLNDLRKYGYYVGYQTGSFVYDVLVQQLQFDPSKLKAYNNIYSYHDALNRGSQDGGVIAILDEVPYLNAYLQTFGSNYIIAGPTHRSEGFGFVFPYNSNLTAHFSRAILNVRENYLIMNQIEEKYFGRIEGL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05194 378 Gene3D - 10 134 - -
Trre16g05194 378 SUPERFAMILY Periplasmic binding protein-like II 15 373 - -
Trre16g05194 378 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 372 IPR015683 -
Trre16g05194 378 Pfam Bacterial extracellular solute-binding proteins, family 3 42 373 IPR001638 -
Trre16g05194 378 SMART GluR_14 15 374 IPR001320 GO:0015276|GO:0016020
Trre16g05194 378 Gene3D - 135 280 - -
Trre16g05194 378 Pfam Ligand-gated ion channel 143 253 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05194 Trre-Chr16 55380803 55382888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05194 11 372 Ion Channels AT5G11210 37.705 4.70e-79 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05194 K05387 - tpra:123903997 551.592