Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05192 ATGGGGTCCTCCTTAAGTTGCTGTGGTTCAGAGAAGGTTGATGAAGTGCCATCATCATATGGTGTAGCTAACAATTCGTGGAGAATATTCACATACAAGGAGTTGCATACAGCTACAAATGGGTTCAGTGATGATTATAAGCTTGGTGAAGGTGGGTTTGGGAGTGTTTATTGGGGAAGAACTAGTGATGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTAGAAGTTGAAGTACTTGGAAGGGTCAGGCACAACAATTTATTGGGTCTTAGGGGCTATTGTGTTGGCGATGATCAACGTCTTATTGTATACGATTACATGCCAAATCTCAGTCTACTTTCTCATCTCCACGGCCAATTTACTGGTGAAGTGCAACTCAATTGGCAAAGGAGAATGAGCATCGCTATTGGCTCTGCCGAAGGCATTTTGTACTTGCATCATCAGGTCACACCTCACATCATCCATAGGGACATAAAGGCAAGTAATGTTTTGCTTGATTCAGATTTTGTGCCTCTAGTTGCTGATTTCGGGTTTGCAAAGCTAATCCCAGAAGGAGTAAGTCACATGACAACCCGTGTTAAGGGTACATTAGGATACTTGGCACCTGAGTATGCTATGTGGGGAAAAGTTTCTGAAAGTTGTGATGTTTATAGCTTTGGAATTCTTCTGCTAGAACTTGTAACCGGTAGAAAGCCGATAGAAAAGTTACCTGGTGGACTTAAGAGAACAATAACTGAATGGGCTGAGCCTTTGATAACCAAAGGAAGGTACAGAGATATGGTTGATCCAAAACTTAGAGGAAACTTTGATGAAAATCAAGTTAAACAAACGGTTAATGTCGCTGCTCTTTGCGTGCAAAGTGAACCTGAAAAACGACCAAACATGAAGCAAGTTGTTAATCTTCTGAAAGGACAAGAACCTGATCAGGGGAAAGTGACTAAGATGAGATTAGATAGTGTCAAATATAATGAAGAATTATTGGCACTTGATCAACCTAGTGATGACGATGATGATGATGATTATGATGGAAATAGTAGCTATGGTGTTTTTAGTGCTATCGATGTTCAAAAGATGAATGATCCTTTCAAGCGCGGTGATATCAAGAAAATCGGCTAA 1149 0.4064 MGSSLSCCGSEKVDEVPSSYGVANNSWRIFTYKELHTATNGFSDDYKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHNNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFTGEVQLNWQRRMSIAIGSAEGILYLHHQVTPHIIHRDIKASNVLLDSDFVPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPLITKGRYRDMVDPKLRGNFDENQVKQTVNVAALCVQSEPEKRPNMKQVVNLLKGQEPDQGKVTKMRLDSVKYNEELLALDQPSDDDDDDDYDGNSSYGVFSAIDVQKMNDPFKRGDIKKIG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05192 382 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 331 - -
Trre16g05192 382 SUPERFAMILY Protein kinase-like (PK-like) 23 313 IPR011009 -
Trre16g05192 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Trre16g05192 382 PANTHER OS01G0253100 PROTEIN 23 319 - -
Trre16g05192 382 CDD STKc_IRAK 48 315 - -
Trre16g05192 382 Gene3D Transferase(Phosphotransferase) domain 1 118 330 - -
Trre16g05192 382 ProSiteProfiles Protein kinase domain profile. 42 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05192 382 Gene3D Phosphorylase Kinase; domain 1 14 117 - -
Trre16g05192 382 Pfam Protein tyrosine and serine/threonine kinase 47 313 IPR001245 GO:0004672|GO:0006468
Trre16g05192 382 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
Trre16g05192 382 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Trre16g05192 382 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05192 Trre-Chr16 55341551 55343354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05192 1 368 Trihelix Transcription Factor Family AT1G70460 43.008 7.13e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Trre16g05192 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05192 - - gmx:100783365 676.781