Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05191 ATGGAACCTCCTTCCTCTTCTAGAATACTAATTGGTCTCTCATTAGACCCAAATGATGGCAAGGAGCTTCTATCATGGGCAATAAGAGTTCTAGCTAATCCAAATGATACTATTGTTGCAGTGCATGTTCTTGTTGGTGAGAATATGAAGAAACGTGTGTCAGTAAGAAGAAGACAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACTTGTTGGTCTAAACAGGTGAATTTGGAGGCAAAAGTGGCACTTAGTTCCACAGTAGGTGGTGGTTTAGTAGAGGAAGCCAAGTCAATTTCTGCTGATTTTCTTCTCCTTCGTGGATCAAGAAACAAAACAAATAAAATTGGAACCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATATAGATGGAGGCTGTACAATGATCTCAGTTGGTAGGTACACAAAGTCAGAACAGAATTATGTCAATTCAAATTCCACACATTTTCAAGAAATGAATGCACAGAACAGTTCGCCGAGAACAGTACTACTAGATGGACTAGAAGGACAATCCAACAGCACAGAAGATGATACATTTAGCACTAGAGCTTCAAGCATGACATATACACCTTCATCTGGTCCCAAGATTAAAAGAAAATCAAAGTTAAGAAAATCACAATTCTCATTCAGGTTCATAATATCATTCCTTGGTTCACCATTCAGAATAAAAAGCTTCAACATGTCCAAAATTGAAAAACATCAACCCTTATTGAAGTGCTTCAGCTATGAAAACATATCAAATGCTACTAATGACTTTCACCAAGATAATATGGTTGGAAGAGGAGGGTACTCAGAAGTATACAAAGGTGTTCTTTGTGATGGAGAAACCATTGCTGTGAAGAGATTAGCCAAAGACAACAATGATCCAAACAAGGAAAGAGATTTTCTTATGGAGTTAGGTGTTATTGGACATGTGTGTCATCCTAATACTGCAACTTTATTGGGCTATTGCATTGAAAATGGACTTTATCTGATTTTCAATTACTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGTTATGGTAAAGCAGGAAATTCACTTGACTGGCCAATAAGATACAAAATAGCTATTGGAGTTGCAAGAGGTCTCCATTATCTTCATACATGTTGTAAACATCGAATAATTCATCGCGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTACTGATTTTGGACTTGCAAAGTGGCTTCCTAACAAGTGGACTCATCATGCTGTAATCCCAGTGGAGGGAACATTTGGATATCTTGCACCAGAAGTCTTTATGCATGGTATTGTGGATGAGAAAACTGATATTTATGCATTCGGCGTTCTTCTTCTCGAGATTGTTACCGGACACAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCAAAGCCTCTGATGGAATCAGGGAATATTGGTGAGCTGGCAGATCCAACAATGGAAGGTAGATATGATGCAGAGCAACTGTATAGGGTAATCCTAACTGCTTCATATTGTGTCAGACAAACTGCCATTTGGCGTCCTACAATGACCGAGGTGTTAGAGTTGCTAACGAGTGGCCAAGACTACGAAGTTGGAAAAAGTTGGAGAATACCAAAGTTCACTTCTGATGAATTAGATGATTACTCTATGATTTTTGGATATGATGTACCCTCAGACATATCTCTAGAGGATTATTTGTAA 1746 0.3832 MEPPSSSRILIGLSLDPNDGKELLSWAIRVLANPNDTIVAVHVLVGENMKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEAKVALSSTVGGGLVEEAKSISADFLLLRGSRNKTNKIGTSKGITKYCFEHIDGGCTMISVGRYTKSEQNYVNSNSTHFQEMNAQNSSPRTVLLDGLEGQSNSTEDDTFSTRASSMTYTPSSGPKIKRKSKLRKSQFSFRFIISFLGSPFRIKSFNMSKIEKHQPLLKCFSYENISNATNDFHQDNMVGRGGYSEVYKGVLCDGETIAVKRLAKDNNDPNKERDFLMELGVIGHVCHPNTATLLGYCIENGLYLIFNYSQNGNLSTALHGYGKAGNSLDWPIRYKIAIGVARGLHYLHTCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIYAFGVLLLEIVTGHRPVDSSKQNILLWAKPLMESGNIGELADPTMEGRYDAEQLYRVILTASYCVRQTAIWRPTMTEVLELLTSGQDYEVGKSWRIPKFTSDELDDYSMIFGYDVPSDISLEDYL 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05191 581 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Trre16g05191 581 PANTHER OS08G0249100 PROTEIN 59 551 IPR046958 -
Trre16g05191 581 Gene3D HUPs 2 139 IPR014729 -
Trre16g05191 581 SUPERFAMILY Protein kinase-like (PK-like) 243 538 IPR011009 -
Trre16g05191 581 Gene3D Transferase(Phosphotransferase) domain 1 347 550 - -
Trre16g05191 581 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 346 552 - -
Trre16g05191 581 MobiDBLite consensus disorder prediction 185 211 - -
Trre16g05191 581 MobiDBLite consensus disorder prediction 185 216 - -
Trre16g05191 581 ProSiteProfiles Protein kinase domain profile. 269 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05191 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 392 404 IPR008271 GO:0004672|GO:0006468
Trre16g05191 581 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 115 - -
Trre16g05191 581 CDD USP_Like 8 119 - -
Trre16g05191 581 SMART serkin_6 269 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05191 581 Pfam Protein kinase domain 269 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05191 581 FunFam Putative receptor-like serine/threonine-protein kinase 236 345 - -
Trre16g05191 581 Gene3D Phosphorylase Kinase; domain 1 235 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05191 Trre-Chr16 55328650 55332513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05191 257 577 Trihelix Transcription Factor Family AT1G70460 38.938 7.97e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre16g05191 Pkinase 6.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05191 - - gmx:100782832 959.133