Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05190 ATGGAACCTCCTTCCTCTTCTAGAATACTAATTGGTCTCTCATTAGACCCAAATGATGGCAAGGAGCTTCTATCATGGGCAATAAGAGTTCTAGCTAATCCAAATGATACTATTGTTGCAGTGCATGTTCTTGTTGGTGAGAATATGAAGAAACGTGTGTCAGTAAGAAGAAGACAATCACAACTTAGGCAGGCAAAAGCATATGTTATATCTGTGCTTGGAGAATTTGCACAGACTTGTTGGTCTAAACAGGTGAATTTGGAGGCAAAAGTGGCACTTAGTTCCACAGTAGGTGGTGGTTTAGTAGAGGAAGCCAAGTCAATTTCTGCTGATTTTCTTCTCCTTCGTGGATCAAGAAACAAAACAAATAAAATTGGAACCTCTAAAGGAATTACCAAGTATTGCTTTGAGCATATAGATGGAGGCTGTACAATGATCTCAGTTGGTAGGTACACAAAGTCAGAACAGAATTATGTCAATTCAAATTCCACACATTTTCAAGAAATGAATGCACAGAACAGTTCGCCGAGAACAGTACTACTAGATGGACTAGAAGGACAATCCAACAGCACAGAAGATGATACATTTAGCACTAGAGCTTCAAGCATGACATATACACCTTCATCTGGTCCCAAGATTAAAAGAAAATCAAAGTTAAGAAAATCACAATTCTCATTCAGGTTCATAATATCATTCCTTGGTTCACCATTCAGAATAAAAAGCTTCAACATGTCCAAAATTGAAAAACATCAACCCTTATTGAAGTGCTTCAGCTATGAAAACATATCAAATGCTACTAATGACTTTCACCAAGATAATATGGTTGGAAGAGGAGGGTACTCAGAAGTATACAAAGGTGTTCTTTGTGATGGAGAAACCATTGCTGTGAAGAGATTAGCCAAAGACAACAATGATCCAAACAAGGAAAGAGATTTTCTTATGGAGTTAGGTGTTATTGGACATGTGTGTCATCCTAATACTGCAACTTTATTGGGCTATTGCATTGAAAATGGACTTTATCTGATTTTCAATTACTCTCAAAATGGAAACTTGTCAACTGCATTGCATGGTAAAGCAGGAAATTCACTTGACTGGCCAATAAGATACAAAATAGCTATTGGAGTTGCAAGAGGTCTCCATTATCTTCATACATGTTGTAAACATCGAATAATTCATCGCGACATTAAAGCCTCTAATGTTCTTCTTGGTCCTGATTATGAACCACAGATTACTGATTTTGGACTTGCAAAGTGGCTTCCTAACAAGTGGACTCATCATGCTGTAATCCCAGTGGAGGGAACATTTGGATATCTTGCACCAGAAGTCTTTATGCATGGTATTGTGGATGAGAAAACTGATATTTATGCATTCGGCGTTCTTCTTCTCGAGATTGTTACCGGACACAGACCTGTTGATTCATCAAAGCAAAACATTCTCCTATGGGCAAAGCCTCTGATGGAATCAGGGAATATTGGTGAGCTGGCAGATCCAACAATGGAAGGTAGATATGATGCAGAGCAACTGTATAGGGTAATCCTAACTGCTTCATATTGTGTCAGACAAACTGCCATTTGGCGTCCTACAATGACCGAGGTGTTAGAGTTGCTAACGAGTGGCCAAGACTACGAAGTTGGAAAAAGTTGGAGAATACCAAAGTTCACTTCTGATGAATTAGATGATTACTCTATGATTTTTGGATATGATGTACCCTCAGACATATCTCTAGAGGATTATTTGTAA 1740 0.3833 MEPPSSSRILIGLSLDPNDGKELLSWAIRVLANPNDTIVAVHVLVGENMKKRVSVRRRQSQLRQAKAYVISVLGEFAQTCWSKQVNLEAKVALSSTVGGGLVEEAKSISADFLLLRGSRNKTNKIGTSKGITKYCFEHIDGGCTMISVGRYTKSEQNYVNSNSTHFQEMNAQNSSPRTVLLDGLEGQSNSTEDDTFSTRASSMTYTPSSGPKIKRKSKLRKSQFSFRFIISFLGSPFRIKSFNMSKIEKHQPLLKCFSYENISNATNDFHQDNMVGRGGYSEVYKGVLCDGETIAVKRLAKDNNDPNKERDFLMELGVIGHVCHPNTATLLGYCIENGLYLIFNYSQNGNLSTALHGKAGNSLDWPIRYKIAIGVARGLHYLHTCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEVFMHGIVDEKTDIYAFGVLLLEIVTGHRPVDSSKQNILLWAKPLMESGNIGELADPTMEGRYDAEQLYRVILTASYCVRQTAIWRPTMTEVLELLTSGQDYEVGKSWRIPKFTSDELDDYSMIFGYDVPSDISLEDYL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05190 579 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524
Trre16g05190 579 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 346 550 - -
Trre16g05190 579 SMART serkin_6 269 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05190 579 ProSiteProfiles Protein kinase domain profile. 269 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05190 579 Gene3D HUPs 2 139 IPR014729 -
Trre16g05190 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 390 402 IPR008271 GO:0004672|GO:0006468
Trre16g05190 579 Pfam Protein kinase domain 269 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05190 579 MobiDBLite consensus disorder prediction 185 211 - -
Trre16g05190 579 MobiDBLite consensus disorder prediction 185 216 - -
Trre16g05190 579 Gene3D Transferase(Phosphotransferase) domain 1 347 548 - -
Trre16g05190 579 PANTHER OS08G0249100 PROTEIN 59 549 IPR046958 -
Trre16g05190 579 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 115 - -
Trre16g05190 579 CDD USP_Like 8 119 - -
Trre16g05190 579 FunFam Putative receptor-like serine/threonine-protein kinase 236 345 - -
Trre16g05190 579 SUPERFAMILY Protein kinase-like (PK-like) 243 536 IPR011009 -
Trre16g05190 579 Gene3D Phosphorylase Kinase; domain 1 235 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05190 Trre-Chr16 55328650 55332513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05190 257 575 Trihelix Transcription Factor Family AT1G70460 39.169 4.77e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre16g05190 Pkinase 2.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05190 - - gmx:100782832 964.14