Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05189 ATGGGTATTGAAAGAGGTGGACTTAAGAGTTTTCGAACCAGCAACTGGAGTGTGCCACCTAAGTCATGTGATTCTTGCAAACTTAATTCTGCCGCGCTTTTTTGCCGTTCAGATTCCGCGTTTCTATGTATCAACTGCGATTCCAGGATTCATTCCGCTAACAAACTCTCTTCCCGCCACGAGCGTGTCTGGATGTGTGAAGTGTGCGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCCGCTGCTCTTTGCGTCACGTGCGATTCTGATATCCACTCTGCTAATCCACTCGCTCGTCGCCACGAGCGTGTTCCCGTCGAACCTTTCTACGACTCCGCTGAATCTGTCGTGAAATCCTCCACTGCCGCCGCCGCTGCTGCCGCTTCCTTCAATTTCGTTGTCCCTACCGATGACGGTTACGGTCAAGACGATGTCGAAGCATCCGCGTGGTTAATTCCGAATCCTAATTTTGGATCTAAACTTGTTGAAACTCCAGATATCAAAACCAGAGAGATGTTCTTTTCCGATATGGATCCGTTTCTCGATTTTGATTACTCAAACAACTTCCAGAACAATCACTGCAGAAACGGTTTAAACGATAGCGTTGTTCCGGTTCAAACAAAACCATCTCCGGCGCCGATGATGAATCCTAACTCAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCTTCGTTTAACTATCCATCACATTCTATTAGCCATAGCGTTTCGTCTTCTTCACTTGACGTTGGAGTGGTACCGGACGGAAACACCGTGTCGGAGTTATCATACACTTTCGGTGGTTCAGAATCAAGTGGAATGGTGTCAGGAGGTGTGAGTAGTAACCAAGGGGTGGTGCAAGGAGCAACTCAATTGTGTGGAATGGATCGTGAAGCAAGGGTTCTTAGGTACAGAGAGAAGAGAAAGAACCGTAAATTCGAGAAAACTATTCGTTACGCTTCACGAAAAGCTTATGCAGAAACCCGGCCCAGAATTAAAGGCCGGTTTGCAAAACGAACCGAAATCGACTCGGATGTGGACCGTTTTTATAACCCGTCCGATCCTCTTACAGTTCCTGGTTCACTTTTAATGGAGTCTCAGTACGGCGTCGTTCCCACGTTTTAG 1140 0.4737 MGIERGGLKSFRTSNWSVPPKSCDSCKLNSAALFCRSDSAFLCINCDSRIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDVEASAWLIPNPNFGSKLVETPDIKTREMFFSDMDPFLDFDYSNNFQNNHCRNGLNDSVVPVQTKPSPAPMMNPNSEGCFDIDFCRSKLSSFNYPSHSISHSVSSSSLDVGVVPDGNTVSELSYTFGGSESSGMVSGGVSSNQGVVQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRFYNPSDPLTVPGSLLMESQYGVVPTF 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05189 379 CDD Bbox1_BBX-like 23 65 - -
Trre16g05189 379 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Trre16g05189 379 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 23 355 IPR045281 GO:0009909
Trre16g05189 379 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Trre16g05189 379 Pfam B-box zinc finger 20 63 IPR000315 GO:0008270
Trre16g05189 379 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Trre16g05189 379 CDD Bbox1_BBX-like 66 108 - -
Trre16g05189 379 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Trre16g05189 379 SMART bboxneu5 66 108 IPR000315 GO:0008270
Trre16g05189 379 SMART bboxneu5 18 65 IPR000315 GO:0008270
Trre16g05189 379 Pfam CCT motif 302 344 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05189 Trre-Chr16 55313916 55315128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05189 1 379 C2C2-CO-like Transcription Factor Family AT5G57660 54.688 7.95e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre16g05189 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05189 - - cam:101510742 575.859