Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05186 ATGGTGTCTCCAAAAAGTATAGGAAAGTATAGAGTTAGCAGAACCATTGGAGAAGGTACATTCTCTAAGGTTAAGCTTGCTTTCAATAATAACAATGGTGAGAAAGTAGCAATCAAGGTCATTGACAAACAAATGGTCTTGAAAAATAATCTTAAGTATCAGGTACAAAGTGAGATTAGAACAATGAAACTTTTAAATCATCCTAATATTGTTAGAATTCATGAGGTTATTGGCACAAAAACAAAAATATACATTGTGATGGAATATGTATCAGGAGGTCAACTATTGGACAAAATGTCCTATGCAAAGTTAGATGAATGTGAGGCAAGAAAACTATTCCAGCAACTTATCGACTCCGTGGACTACTGTCATAACAAGGGAGTTTATCACCGCGATTTAAAGCCTGAAAATTTGCTCCTTGACAGCAAGGGAAACCTAAAAGTGTCTGATTTTGGATTAAGTGCATTGAAAAAGTCTAATGATGTTTTAAACACAAGGTGTGGATCCCCATGCTACGTGGCTCCCGAGGTTCTGATGAGCAAAGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTCGAGTTACTTGCTGGTTTTCTACCATTTGATGACCAGAATTTGACGAGTTTATACCATAAGATATGCAAAGCAGAATATATATGCGCCCCATGGTTTACTATAAGTCAAAAGAAACTAATCGCCAAAATACTTGAACCGCGTCCTCTAAAGCGGATAACCATATCGGATATTATTGAAAATGAGTGGTTTCAAACAGATTATAAGCCCGTCCGCGCTTGTGAGTTTGACTCGATCATTAACTTGGATGAAGATAGTGCTACTTTTGACTCAATTGAGGAGAAAACTACAAAGTCATCGATAACGAAATCCTCGAGCTTCATTAATGCATTTCAACTGATAGCCATGTTTCAGGACTTTGATCTATCGTCCCTTTTCGAAGAACAGGATCACAAGAAGCAGACAACAATGTTTGGATCCCAACACACAATCAGTGAAACAGTAGAAAAAATAGAAGCTGCTGCAACAGATGTGAGATTGTCAGTAGAGAAAATGAACAACTTTAAGATGAAAATGCACCCGAAACCGTCGATGACTAGGTGTTCAAGATCATACTTTGACCTATCAGCTGAGGTGATAGAAGTTGCTCCAACTCATTGTGTTATACAAATATCAAAATCTGTAGGAGATCTAAGAATGTACAATGAATTTTGTGAAAGTTTATCAAGTCTGCTGAAAGAAAATTCTAATATGCTATCACAAGGCCAAGACTCTGTGGATCAATGTGACACTGGCAGCATAGAAAAACAAGATGCTGAATGCTATGAAAAGCCAAATAGTGAAGATTTTCGTGGCTATAAATCTGCTTGA 1401 0.3762 MVSPKSIGKYRVSRTIGEGTFSKVKLAFNNNNGEKVAIKVIDKQMVLKNNLKYQVQSEIRTMKLLNHPNIVRIHEVIGTKTKIYIVMEYVSGGQLLDKMSYAKLDECEARKLFQQLIDSVDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALKKSNDVLNTRCGSPCYVAPEVLMSKGYDGAAADVWSCGVILFELLAGFLPFDDQNLTSLYHKICKAEYICAPWFTISQKKLIAKILEPRPLKRITISDIIENEWFQTDYKPVRACEFDSIINLDEDSATFDSIEEKTTKSSITKSSSFINAFQLIAMFQDFDLSSLFEEQDHKKQTTMFGSQHTISETVEKIEAAATDVRLSVEKMNNFKMKMHPKPSMTRCSRSYFDLSAEVIEVAPTHCVIQISKSVGDLRMYNEFCESLSSLLKENSNMLSQGQDSVDQCDTGSIEKQDAECYEKPNSEDFRGYKSA 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05186 466 SMART serkin_6 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05186 466 FunFam Non-specific serine/threonine protein kinase 300 426 - -
Trre16g05186 466 ProSiteProfiles Protein kinase domain profile. 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05186 466 Gene3D Kinase associated domain 1, KA1 300 425 - -
Trre16g05186 466 Pfam Protein kinase domain 10 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05186 466 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 417 - -
Trre16g05186 466 SUPERFAMILY Protein kinase-like (PK-like) 7 297 IPR011009 -
Trre16g05186 466 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Trre16g05186 466 ProSitePatterns Protein kinases ATP-binding region signature. 16 48 IPR017441 GO:0005524
Trre16g05186 466 CDD CIPK_C 306 423 - -
Trre16g05186 466 Gene3D Transferase(Phosphotransferase) domain 1 92 284 - -
Trre16g05186 466 Pfam NAF domain 303 361 IPR004041 GO:0007165
Trre16g05186 466 FunFam Non-specific serine/threonine protein kinase 2 89 - -
Trre16g05186 466 FunFam Non-specific serine/threonine protein kinase 3 302 - -
Trre16g05186 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Trre16g05186 466 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05186 Trre-Chr16 55284551 55287316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05186 87 422 CBL-interacting serine-threonine protein kinases AT5G57630 61.721 4.18e-143 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre16g05186 Pkinase 7.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05186 - - mtr:11440772 766.533