Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05180 ATGTGTAATAAAGGGTTTCAATGCTTGAGCGAGTCTGAGATTGTAATTGATCATAGACAGCATTTTCTTATCATGGATAGTCCTACAACCGTTAGATCGCCGGCTACAGCCACCACAACCGGTTCTGGTTCCGGTTCAAACGATGATGGCCGGCGTGTTAAATTTTTGTGTAGTTTTCTAGGTAGTATAATGCCACGTCCACAAGATGGGAAACTACGTTATGTTGGTGGAGAGACAAGAATTGTGAGTGTTTCCAGAGATATTAGTTTTGAGGAGTTGATGGGGAAGATGAGGGAGTTGTATGAAGGTGTTGCTGTGTTGAAGTATCAGCAACCTGATGAAGATCTTGATGCACTTGTATCTGTTGTTAATGATGATGATGTGGTTAACATGATGGAAGAGTATGATAAGTTAGGTTCCGGGGATGGGTTTACCAGGCTTAGGATTTTCTTGTTTTCGCAATCCGAGCAAGATGGTTCCGCACACTTCATTGATGGGGATGATCCTGAGAGGAGGTATGTGGATGCGTTGAATAGTTTAAATGACGCTTCTGAGTTACGGAGGTTGCAGCAAATGGAGTTTCCTATGATTGGTACCATTGAGGATATCCATGTGGCTGATCCATTCATTAATCCTATTGCCGTGGAAAATGGGATTCATAGCCAGAGAAGCGGGGAACTAGGCATGTCACAGTATAATTTGCATCATATCCCTATCCCGCACCAGCAACCTATGGGTCAGAGGTATAATGAAATTGATGCTCAGTGGAATCCTGGTTATTACTCTCCTAGGCATCATGGTCAGTGTCACCATGACTCCAGATCATCATTGGTTGACTATCCATCTTCTCCATCTGGCACAAGGTACCGCGTGCCATTTCCTGAGATGCCAGATAAGGGCATTGATAGAGTGCCAGACGAATATGCTCGACATCATGTAAATCACCATCCTTTATACGACAATCAACCACAGTATCCTGAAAACGTTGTGTGGCTGCCAACCGGAGCAGCACATGGTGATAAGTCCGGTTTTCCAAGCAACCTTCTTCATGGTTCTCATGCTCTTGATGGGAATAATATATGCGAGCACTGTCGCATGGGTTTTCAGAGAGCTCAACCGCATTTGGAGCATCCTAATATGCTTCCACCTGTTGCCATTCCATGTCCGGAATGCCCCTCAAGCAGGGATGCTCTCGCAGTGAATGCTGATGGCAAGTTACAGCCTACAATATATCCCAATGATACTCAGAATCATGAGAGAGGATGTGGTTTGCAGCATCAGGGTTCTGGAAGAGTGAGTGATCATTATGTTGGCGATGTTCCTATTATTAATTTCCCTCATGGACATGGTAGTATTATTGATGGACATGTTCTTCCTTCCAATCATGTTCATCAACAGGTTGGACCTGAATTGGGGGTTGAACTGTTCCCTGACCAAACCATGGCTGCTATACCGCATCTAAAAATTCCTCCGTTGGAAGAATGCAGTGTGCAGTATGGAAAGACATCTTCTCCTTATGGAGTAGATAATAATTATGCTGTGCCTTGTGGACATGCACCTGGTTATACTCTTTGGAGAAACGGTCCGACTCCAGTTCATATTGGATCACCACACGATGCAATTACTCCCCCTCAGCCGGTTGATGGTGTGATAAATACTGGAATAATCAGGGGAGAGGGCAGTCCAGGTTTTTTCGTTGGACCGGATAGTCAAAGTCTTTGGGTTGATTCGTCACAGAAATATCCAGGTCATGACGGGTCAGCCATCCCCGAATACCCTTATGCAAATGCTTCGAAGTTGAATCCAATGACCAACGGTCAGGAAAACCAACACCCAATTATTTTAGATGCCATTCATCCTCCACAGGAAGTAAACGCTGGTACCTGCTTGGAACCTGTGCAGCTGCAAAAAACTTCTCTTAATATGTTTCACAATAATGAGGTTTTGAAAATTGATACTCATTTGACTGAAGTGATCAGTTTGCAATCTTTAAGTTTGCATGGAGAAGGAAAAGAAACAAAAAATAAGGATAATGTTGTGAACTCAAATTGTAAAAATTCATTTTTGAAACCCGCATCAGAGTGTGGACATGTCGAGAAACTGGACGATAATGACTGTACTGCTCATGAAGATTCTAAGCATTTAGCTGATCAATTCAATATCTTGCCTGAGTTAATTGCTTCTGTTAAAAAGGCTGCGTTAGAATGTCACGATGAGGTGAAACCTACATGTGAAGAGCGTGTCAATTGTCAGATTGATAATTCAAATACCAAAGAAGAAACAGCAAATGAAGTTGAACCAGTGAATGCTAATGGTGATTTAGAATTGGACACTGAAAACGACCGTGTTGATACTTCTAAAATCGAGCCTACAAAGGCTGAGGCAGAAGCAATTGCTAGGGGATTACAGACAATTAGAAATGACGATTTGGAGGAGATCCGTGAGCTAGGTTCTGGGACTTATGGGGCTGTTTATCATGGGAAATGGAAAGGTTCCGATGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTTCTGGAAGACCATCAGAAAGAGCAAGATTGATTGCAGATTTCTGGAAGGAGGCATTAATGCTGAGTTCATTGCATCATCCGAATGTTGTCGCTTTCTATGGTATTGTTCGTGATGGTCCTGATGGGACTTTAGCAACAGTGACAGAATTCATGGTTAATGGATCTTTGAAACAGTTCTTGCATAAGAAGGACAGAACGATAGATCGTCGGAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAGAACATAGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAACATGAGAGATCCACAACGACCTGTCTGCAAGATTGGTGATTTGGGTCTATCAAAGGTTAAGCAGCACACACTAGTGTCTGGAGGGGTACGCGGAACTTTACCTTGGATGGCACCTGAACTTCTTAGCGGGAAAAGCAATATGGTGTCGGAGAAGATCGATGTTTACTCTTTCGGGATAGTCATGTGGGAATTACTCACAGGGGATGAACCTTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCTCAAATCCCAACATGGTGCGATCCTGAGTGGAAGTCTCTAATGGAAAGTTGTTGGGCTTCCGATCCTACAGAAAGGCCATCATTTGCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTTCAGTGAATGTGAAATAG 3252 0.4293 MCNKGFQCLSESEIVIDHRQHFLIMDSPTTVRSPATATTTGSGSGSNDDGRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVSRDISFEELMGKMRELYEGVAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSAHFIDGDDPERRYVDALNSLNDASELRRLQQMEFPMIGTIEDIHVADPFINPIAVENGIHSQRSGELGMSQYNLHHIPIPHQQPMGQRYNEIDAQWNPGYYSPRHHGQCHHDSRSSLVDYPSSPSGTRYRVPFPEMPDKGIDRVPDEYARHHVNHHPLYDNQPQYPENVVWLPTGAAHGDKSGFPSNLLHGSHALDGNNICEHCRMGFQRAQPHLEHPNMLPPVAIPCPECPSSRDALAVNADGKLQPTIYPNDTQNHERGCGLQHQGSGRVSDHYVGDVPIINFPHGHGSIIDGHVLPSNHVHQQVGPELGVELFPDQTMAAIPHLKIPPLEECSVQYGKTSSPYGVDNNYAVPCGHAPGYTLWRNGPTPVHIGSPHDAITPPQPVDGVINTGIIRGEGSPGFFVGPDSQSLWVDSSQKYPGHDGSAIPEYPYANASKLNPMTNGQENQHPIILDAIHPPQEVNAGTCLEPVQLQKTSLNMFHNNEVLKIDTHLTEVISLQSLSLHGEGKETKNKDNVVNSNCKNSFLKPASECGHVEKLDDNDCTAHEDSKHLADQFNILPELIASVKKAALECHDEVKPTCEERVNCQIDNSNTKEETANEVEPVNANGDLELDTENDRVDTSKIEPTKAEAEAIARGLQTIRNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFSGRPSERARLIADFWKEALMLSSLHHPNVVAFYGIVRDGPDGTLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGDEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPTERPSFAEISKKLRSMAASVNVK 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05180 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Trre16g05180 1083 SMART serkin_6 810 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05180 1083 Pfam Protein tyrosine and serine/threonine kinase 811 1073 IPR001245 GO:0004672|GO:0006468
Trre16g05180 1083 Gene3D - 71 155 - -
Trre16g05180 1083 CDD PB1_UP2 56 152 - -
Trre16g05180 1083 CDD STKc_MAP3K-like 816 1073 - -
Trre16g05180 1083 SUPERFAMILY CAD & PB1 domains 69 158 - -
Trre16g05180 1083 PRINTS Tyrosine kinase catalytic domain signature 929 947 IPR001245 GO:0004672|GO:0006468
Trre16g05180 1083 PRINTS Tyrosine kinase catalytic domain signature 1000 1022 IPR001245 GO:0004672|GO:0006468
Trre16g05180 1083 PRINTS Tyrosine kinase catalytic domain signature 1044 1066 IPR001245 GO:0004672|GO:0006468
Trre16g05180 1083 PRINTS Tyrosine kinase catalytic domain signature 892 905 IPR001245 GO:0004672|GO:0006468
Trre16g05180 1083 SUPERFAMILY Protein kinase-like (PK-like) 802 1071 IPR011009 -
Trre16g05180 1083 Gene3D Transferase(Phosphotransferase) domain 1 897 1082 - -
Trre16g05180 1083 PANTHER SERINE-THREONINE PROTEIN KINASE 108 1076 - -
Trre16g05180 1083 ProSiteProfiles Protein kinase domain profile. 810 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05180 1083 ProSitePatterns Protein kinases ATP-binding region signature. 816 837 IPR017441 GO:0005524
Trre16g05180 1083 MobiDBLite consensus disorder prediction 265 297 - -
Trre16g05180 1083 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 72 154 - -
Trre16g05180 1083 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 803 897 - -
Trre16g05180 1083 SMART PB1_new 67 152 IPR000270 GO:0005515
Trre16g05180 1083 Gene3D Phosphorylase Kinase; domain 1 795 896 - -
Trre16g05180 1083 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 898 1083 - -
Trre16g05180 1083 Pfam PB1 domain 68 153 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05180 Trre-Chr16 55241222 55245870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05180 47 1083 MAP Kinase Kinase Kinase AT5G57610 54.294 0.0 1038
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Trre16g05180 PK_Tyr_Ser-Thr 7.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05180 - - tpra:123909448 2066.58