Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05176 ATGCAGAGACCAACTACCGACGGAATTAATATGGGGAAAAGAACCCTGGAAGGTGGTGAAGATGACCAGCCTGAACGAAAGAGGCCTGCTCTTGCTAGTGTAATTGTTGAAGCTCTCAAGGTGGACAGTTTGCAGAAGCTTTGCTCATCTTTAGAACCTATTCTTCGTAGAGTTGTGAGTGAAGAAGTAGAGCGTGCTTTGGCAAAGTTAGGTCCTGCAAGAGTTGGTGGAAGGTCTCCCCCTAAAATGATTGAAGGTCCGGATGGCAGAAATTTGCGGCTTCAATTTAGGTCCCAACTGGCTCTTCCTCTATTCACAGGAGGAAAAGTGGAAGGCGAGCAGGGGGCTCCAATTCATGTTGTTCTGGTTGATGCCAATAGTGGAAATGTTGTAACATCTGGACCTGAATCCTGTATAAAACTTGATATTGTTGTCCTCGAAGGCGATTTTAACAATGAAGATGATGAAGATTGGACCCAAGAAGAATTTGAAAGCCATGTGGTGAAAGAACGTGAAGGAAAGAGACCTTTGCTGTTTGGGGATCTGCAAGTGACACTCAAGGAAGGAGTTGGAACATTGGGGGAACTGACATTTACAGACAATTCAAGTTGGATAAGGAGCCGTAAATTTAGGCTTGGCATGAAGGTTGCATCAGGTTTTGGCGAGTCTATACGCATCCGCGAAGCCAAGACAGTGGCTTTCACTGTGAAAGATCATAGAGGAGAACTATATAAGAAGCATTATCCTCCTGCATTGACTGATGAGGTATGGAGATTAGAGAAAATAGGCAAGGATGGGTCATTTCACAAAAAGTTGACTATTGCAGGAATATACACAGTTGAAGACTTCCTTCGACTTGTGGTGCAGGATCAACAGAAATTGCGGAATATCCTTGGAAGTGGTATGTCAAACAAGATGTGGGAAGCTCTCTTAGACCATGCAAAGACATGTGTTCTAAGTGGAAAGCTTTATGTTTATTATCCCGAGGATACAAGAAATGTTGGTGTTATTTTTAACCACGTCTATGAGCTGCGTGGTCTTATAACAGGAGAGCAATTCTTTTCTGCTGATTCTCTCAGCGATAATCAGAAGGTTTACGTAGATTCATTGGTGAAGAAGGCATACGACAATTGGGAGCAGGTTATAGAGTACGATGGCAAATCACTTGTGGATGCTGAGCAAAATAACAACTCTGTTGAAACTGAAAATGAACTTCATGTCGATTCAATTGATTATGTTGGTGGTTTAGATCATCAGCTGCAAATGCCATCCCTCCCCATGTCTGTTACTTCTGACCAGCAGATTAATTCGGGGATACCAATTGGAGGTTATAACAATAATATGGTGATGAGGTATCCAAGCCAGGCATTGATCGGAAATTCCGGCTCTCGGAGTCAGTACGAAGGCTCATTATATGTGTCTAATGACCAATTAATAAGCAATGCTCACCAATCTCAAAGCTCTAGAAATGATCATAGCACAGTCGGGTTGGCTCTTGGTCCTCCTCAATCATCGACATCAGGTTTCCATGCTGGTAGCTCTTCCATTCAACCATCTCCCCCAAATCTTTTTGATGATTGGTCACACAACAGAGACAAGGGTGTTGATGACTTCTTTTCAGAGGATGAAATCCGTGTTAGAAGTAATGAAATACTAGAGAATGAAGACATGCAGCACTTGCTTCGCCTTTTCAGCATGGGAGGTCATTCTTCCATGAATCCTGAGGATGGTTATTCATTCCCACCATTCATGCCATCTCCTATGCCGAACTTTGACGAGGATCGCTCTCGTCCTGGCAGAGCTGTTGTGGGATGGTTGAAGATCAAGGCAGCAATGAGGTGGGGCTTCTTTATCAGGAAGATAGCAGCTGAGAAGCGGGCTCAGATAGAGGAGATAGAGGAATAG 1905 0.4362 MQRPTTDGINMGKRTLEGGEDDQPERKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARVGGRSPPKMIEGPDGRNLRLQFRSQLALPLFTGGKVEGEQGAPIHVVLVDANSGNVVTSGPESCIKLDIVVLEGDFNNEDDEDWTQEEFESHVVKEREGKRPLLFGDLQVTLKEGVGTLGELTFTDNSSWIRSRKFRLGMKVASGFGESIRIREAKTVAFTVKDHRGELYKKHYPPALTDEVWRLEKIGKDGSFHKKLTIAGIYTVEDFLRLVVQDQQKLRNILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDTRNVGVIFNHVYELRGLITGEQFFSADSLSDNQKVYVDSLVKKAYDNWEQVIEYDGKSLVDAEQNNNSVETENELHVDSIDYVGGLDHQLQMPSLPMSVTSDQQINSGIPIGGYNNNMVMRYPSQALIGNSGSRSQYEGSLYVSNDQLISNAHQSQSSRNDHSTVGLALGPPQSSTSGFHAGSSSIQPSPPNLFDDWSHNRDKGVDDFFSEDEIRVRSNEILENEDMQHLLRLFSMGGHSSMNPEDGYSFPPFMPSPMPNFDEDRSRPGRAVVGWLKIKAAMRWGFFIRKIAAEKRAQIEEIEE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05176 634 MobiDBLite consensus disorder prediction 482 524 - -
Trre16g05176 634 MobiDBLite consensus disorder prediction 1 27 - -
Trre16g05176 634 PANTHER OS02G0177800 PROTEIN 13 557 IPR012416 GO:0005516
Trre16g05176 634 MobiDBLite consensus disorder prediction 482 527 - -
Trre16g05176 634 Pfam Calmodulin binding protein central domain 252 317 IPR046830 -
Trre16g05176 634 Pfam Calmodulin binding protein C-terminal domain 322 384 IPR046829 -
Trre16g05176 634 Pfam Calmodulin binding protein-like N-terminal domain 92 239 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05176 Trre-Chr16 55207723 55212748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05176 1 629 Calmodulin-binding Proteins AT5G57580 66.041 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05176 - - cam:101488801 1157.51