Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05161 ATGAATAATTTTCATCCTAATACTTCTCTTCACTTAAATCAACCAGGACATAATAATCTTAATCTAGATCTTGTCCTTGAACCATCTTCTTCTTCATCATCATCTTCTTCACCTAATATTGAACAAAGAATATTCTCATGCAACTATTGTCAAAGAAAGTTTTATAGCTCACAAGCTTTGGGAGGACACCAAAATGCTCATAAGCTTGAAAGGACACTTGCTAAGAAAAGCTGGGAGATAAGTTCAGCCATGCAATCTTCTAATTATGTTGAATTACCAGAACACCCTTCATCAAACTTCAATGCTCATTTTGATCATAATAACAATCATGTGATGAGACATGGTGGTGGAAGAAAAGATAAGTTTAGTTATGGTAATTCTAAGGAAGGTGTGACTTCTTGGTCAAGGGGTTATAATACTACTTCTGAACACGTTCAGGAGGATATTAGCCAACTTGATTTGTCCTTAAGGCTTTAA 477 0.348 MNNFHPNTSLHLNQPGHNNLNLDLVLEPSSSSSSSSSPNIEQRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSWEISSAMQSSNYVELPEHPSSNFNAHFDHNNNHVMRHGGGRKDKFSYGNSKEGVTSWSRGYNTTSEHVQEDISQLDLSLRL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05161 158 Gene3D Classic Zinc Finger 29 102 - -
Trre16g05161 158 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
Trre16g05161 158 FunFam Zinc finger protein 2 24 91 - -
Trre16g05161 158 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Trre16g05161 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Trre16g05161 158 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 104 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05161 Trre-Chr16 55136806 55137282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05161 3 158 C2H2 Transcription Factor Family AT5G57520 51.220 1.07e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g05161 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05161 - - aip:107620426 169.474