Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05160 ATGTCACCATTTCCTCCACAACAAGAAGAATTCATATTCCGTTCCAAACTCCCAGACATTGAAATTCCAACATATCTTCCATTACACTCTTATTGTTTCCAAAAACTCTCTCAATTCCATAACCGTCCATGTCTCATCAACGGCGACACTGGCGAAATCTTAACATACTCCGACGTCCACCTCACCGTCCGCAAAATCGCCGCCGGTTTAAACACTCTCGGAATCAATCAAGGTGATGTCATCATGCTCGTCCTCCGTAACTCACCTCAATTCGCACTCACTTTCCTTGGCGCTTCCTTCCGCGGCGCCGTTATCACCACCGCAAATCCTTTCTACACCTCATCGGAACTCGCGAAACAAGCCACAGCAACAAAAACTAAACTCATCGTAACTCAATCCGCATATCTAAGTAAAATCAACGATTTCGCTAAATTCAACAACATCAAAATCGTCTGCATAGATTCATCATCGTCGCCGTCGTCGGAAGAAGATGCCACCGGCGTTGTGGATTTTTCAGTTTTAACAAATGCTGATGAAAACGATTTACCAGATGTTAAACTAACGCCTAACGACATCGTTGCGTTACCGTTTTCTTCGGGAACTTCAGGACTTCCAAAAGGCGTTATGTTAACACATGAAAATTTAGTTACAACTATATCACAGTTAGTTGACGGTGAAAATCCACATCAATACACTAACGGCGAGGATGTGTTACTCTGTGTGTTACCTATGTTTCATATCTATGCACTCAATTCAATATTACTATGTGGAATTCGTTGTGGTGCTGCGGTTTTAATTGTGGAAAAATTTGAGATTAAAACGTTATTGGAACTTATTGAAAAGTTTAAAGTGACGGTAGCGTCGTTTGTGCCACCAATTGTTTTGGCGTTGGTAAAAAGTGGTGAATCAAATAAATATGATTTGTCGTCTATTAGAGCGATGATTACTGGTGCAGCACCTATGGGAATGGAACTTGAACAAGCTGTAAAGGATAGATTGCCACATACAGTACTTGGTCAGGGATACGGCATGACAGAGGCAGGACCACTATCAATTAGCCTTGCATTTGCAAAGGAACCATTCAGAACAAAACCCGGTGCATGTGGCACCGTCGTAAGAAACGCCGAGATGAAAATCGTTGATACAGAGACTGGTGTTTCTCTTCCTAGAAACAAAGCTGGTGAAATTTGCATTAGAGGCACAAAGGTTATGAAAGGATACCTAAATGATCCTGAGGCGACAAAGAGAACTATAGACGAAGAGGGATGGCTACACACGGGTGACATTGGTTTGATTGACGATGATGATGAACTCTTCATCGTTGATCGATTAAAAGAATTGATCAAATACAAAGGATACCAAGTAGCTCCTGCTGAGCTCGAAGCATTGTTAATTTCACACTCGAACATTTCTGATGCTGCTGTTGTACCATTGAAAGATGAAGTTGCTGGAGAATTACCGGTTGCATTTGTTGTAAGATCAAACGGTTCAAAGATCAGTGAAGATGAAATCAAGCAATACATTTCACAACAGGTTGTATTTTACAAGAGAATAAACAGAGTTTATTTCACAGACACTATTCCTAAAGCGGCCTCTGGCAAAATTCTCCGAAAGAAATTAACCGCAAGACTTAACGAAGGTTTGGTGGTGGCCACTTAA 1659 0.4135 MSPFPPQQEEFIFRSKLPDIEIPTYLPLHSYCFQKLSQFHNRPCLINGDTGEILTYSDVHLTVRKIAAGLNTLGINQGDVIMLVLRNSPQFALTFLGASFRGAVITTANPFYTSSELAKQATATKTKLIVTQSAYLSKINDFAKFNNIKIVCIDSSSSPSSEEDATGVVDFSVLTNADENDLPDVKLTPNDIVALPFSSGTSGLPKGVMLTHENLVTTISQLVDGENPHQYTNGEDVLLCVLPMFHIYALNSILLCGIRCGAAVLIVEKFEIKTLLELIEKFKVTVASFVPPIVLALVKSGESNKYDLSSIRAMITGAAPMGMELEQAVKDRLPHTVLGQGYGMTEAGPLSISLAFAKEPFRTKPGACGTVVRNAEMKIVDTETGVSLPRNKAGEICIRGTKVMKGYLNDPEATKRTIDEEGWLHTGDIGLIDDDDELFIVDRLKELIKYKGYQVAPAELEALLISHSNISDAAVVPLKDEVAGELPVAFVVRSNGSKISEDEIKQYISQQVVFYKRINRVYFTDTIPKAASGKILRKKLTARLNEGLVVAT 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05160 552 Pfam AMP-binding enzyme 35 450 IPR000873 -
Trre16g05160 552 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Trre16g05160 552 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Trre16g05160 552 SUPERFAMILY Acetyl-CoA synthetase-like 12 546 - -
Trre16g05160 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 541 - -
Trre16g05160 552 CDD 4CL 22 540 - -
Trre16g05160 552 Gene3D - 445 548 IPR045851 -
Trre16g05160 552 Gene3D - 5 444 IPR042099 -
Trre16g05160 552 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Trre16g05160 552 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05160 Trre-Chr16 55117340 55126936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05160 10 512 Monolignol Biosynthesis Gene Families AT1G51680 63.492 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05160 K01904 - gmx:100810418 848.195