Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05159 ATGGAAAACTTAAGTTGGTTGAGTATAAGAATAAAAAGTTGTTTCGAAGGGTTTGAGCCAAAGAATATGGTGGAATGGAATTTAGGAAATTGGACTAATGGTTGTGTTAGGAAAGAAAGATTGAAGTGTGAGATGTTGAAGAATGGATCAAGTGAAGTGAAACAAGATGGTTTTTCTGTGAATCATAATATGAAAGTTCCTGATTTTATTGATTCTATTGACAGCTCAGTCCATAATCAAAATAAGTGTGAAACAGATTGTTTGAAAAATTGTTCTTGTTTGGCACATGCATACGATCCTTACATAGGTTGTATGTATTGGAGTCGAGAGTTAGTTGATTTGCAGAAATTTTCTTATGGTGCTGGAGTTGATCTCTTCATTCGTGTACCGGCTGAATTAGCTGCAGTTGCAGATAATAAAAAGAAAAAAGGGCACAACAACAGTTTTATAATCATTCCTACTGTTGGAGGGATAGGAGCACTTACCTTAGTTATATGTGCTTATCTTTTGTGGAGCAAATGTTCTGCTAGACATAAAGAAAGACACTCTCAAAACTCGATTATGAGAAGACAAAAACAAATGAAATTGGATGAGCTACCACTATATGATTTTAAAAAGCTCGAAACTGCAACAAACAATTTTCACATTGATAACATGCTTGGGAAGGGAGGTTTTGGCCCAGTATACAAGGGAATAATGGAAGATGGTCAAGAAATTGCAGTGAAAAGACTCTCAAAAACATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTATTGGTGATTTCAAAACTTCAACATCGAAACCTTGTAAGACTTCTTGGTTGTTGTGTTGAAAGAGGCGAGCAAATGTTGGTTTATGAGTTGATGCCAAATAAGAGTTTGGATGCTTTTCTCTTTGATCCAATACAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAAACATAATCGAAGGAATAGCTCGAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGACGATGATGAAGCTAACACAAACAGGGTTGTTGGAACATATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCTGAGAAATCAGATGTCTATAGCTTTGGAGTTTTATTGCTAGAGATTGTTAGCGGAAGAAGAAACAATAACTTTTATAACGAGGATTCTCTTAGCCTTGTAGGCTTTGCATGGAAGCTATGGTTAGAGGACAACATTATATCTCTAATAGATCCAGAAGTATGGGATGCATGCTTTGAGAGCAACATGTTGAGGTGCATACACATAGGACTTCTCTGTGTGCAAGAACTTCCAAGAGAAAGGCCAAATATATCAACTGTTGTTTTGATGCTTATAAGTGAGATTACACATCTTCCTCCTCCAGGGAAAGTTGCGTTTGTTTACAGACGAAGTACACAATCTTCTCAAAAAAGTCATCAATCTAACTCAAACAACAATGTAACTCTGAGTGAAGTTCAAGGCAGATAA 1488 0.3629 MENLSWLSIRIKSCFEGFEPKNMVEWNLGNWTNGCVRKERLKCEMLKNGSSEVKQDGFSVNHNMKVPDFIDSIDSSVHNQNKCETDCLKNCSCLAHAYDPYIGCMYWSRELVDLQKFSYGAGVDLFIRVPAELAAVADNKKKKGHNNSFIIIPTVGGIGALTLVICAYLLWSKCSARHKERHSQNSIMRRQKQMKLDELPLYDFKKLETATNNFHIDNMLGKGGFGPVYKGIMEDGQEIAVKRLSKTSGQGIEEFMNEVLVISKLQHRNLVRLLGCCVERGEQMLVYELMPNKSLDAFLFDPIQKKILDWRKRSNIIEGIARDFGLARIVKGGDDDEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNNNFYNEDSLSLVGFAWKLWLEDNIISLIDPEVWDACFESNMLRCIHIGLLCVQELPRERPNISTVVLMLISEITHLPPPGKVAFVYRRSTQSSQKSHQSNSNNNVTLSEVQGR 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05159 495 Gene3D Transferase(Phosphotransferase) domain 1 323 457 - -
Trre16g05159 495 ProSiteProfiles Protein kinase domain profile. 214 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05159 495 SMART ntp_6 53 129 IPR003609 -
Trre16g05159 495 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 322 - -
Trre16g05159 495 ProSiteProfiles PAN/Apple domain profile. 43 130 IPR003609 -
Trre16g05159 495 SUPERFAMILY Protein kinase-like (PK-like) 199 477 IPR011009 -
Trre16g05159 495 MobiDBLite consensus disorder prediction 474 495 - -
Trre16g05159 495 Gene3D Phosphorylase Kinase; domain 1 172 289 - -
Trre16g05159 495 Pfam Protein tyrosine and serine/threonine kinase 215 302 IPR001245 GO:0004672|GO:0006468
Trre16g05159 495 Pfam Protein tyrosine and serine/threonine kinase 323 447 IPR001245 GO:0004672|GO:0006468
Trre16g05159 495 Pfam PAN-like domain 54 114 IPR003609 -
Trre16g05159 495 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 177 289 - -
Trre16g05159 495 CDD PAN_AP_plant 48 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05159 Trre-Chr16 55104103 55106937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05159 143 466 Receptor kinase-like Gene Family AT4G23230 46.667 1.91e-99 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g05159 PK_Tyr_Ser-Thr 4.9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05159 - - ccaj:109790907 677.167