Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05158 ATGGCTTCCCTAAATCATAACATAAATCGCTTGTTCATTACTTTGCTCATATTTTGTACCTTTTTTTCATGTTATAGTTCACTCAACGACACAATTACATCATCCAAATCACTCAAAGACCAACAAACAATAACCTCAAACAACACAAACTTCAAGCTAGGATTTTTCAGCCCAATAAATTCAACAAATCGTTACCTAGGAATTTGGTACATCAATGAAACCAACAACATATGGATTGCAAATAGAGATCAACCTCTTAAAGATTCAAATGGAATTGTCTCAATTCACAAAGATGGAAATCTTGTAATATTGAACAATCAAAATGGCATCATCATTTGGACAACAAATATTTCAAATACTTCAACAAATTCAACAGCTCAACTTAATAATTTAGGAAACTTAATATTGAGAGACATATCAGGAACACCAATTTGGGATAGTTTCTCACATCCTGCAGATGCAGCTGTTCCAACAATGAGAATTTCTACTAATAAAATAACAGGTAAGAAAATAGCTTTTGTAGCAAGAAAAGGTGACAATGATCCTTCTTCAGGACCATTTTCAGCTAGTATTGAAAGATTGGGTACCCCAGAAGTTTTTATTTGGCATGATAAAAATATTCATTGGAGAACTGGTCCATGGAATGGTAGAGTTTTTCTCGGATCACCAAGAATGTTAACCTTGTATTTATCCGGTTGGCGTTTAGTTCTGGACGATGATGAAACTTATTTAACTTACGATTTTAACGACAAAACTATGTTTGCAATTCTCTCATTGACACCACATGGAAAACTTAAGTTGTTTGAATATAAGAATAAAAAGGTAACTGTTAATATTACTGTTGGTCAAAATGAGTGTGATTTATATGGAAAATGTGGACCTTTTGGGAATTGTGATAATTCTAGAGTACCAATTTGTAGCTGTTTTGAGGGGTTTGAGCCAAAGAATTCGGTGGAGTGGAGTTTAAATAATTGGACTAATGGTTGTGTGAGGAAAGAAGGATTTAACTTGAAGTGTGAGATGTTGAAGAACGGATCAAGTGAATTCAAACAAGATAGTTTTTTGGTGAAACAAAATATGAAAGTTCCTGATTTTATTGAGAGATCAGATGGTAATCAAAACAAGTGTGGACCAGATTGTTTGGCAAATTGTTCTTGTTTGGCACATGCATACGATCCTAACATAGGTTGTATGTATTGGAGTCGAGAGTTAGTTGATTTGCAAATATTTCCTTTTGGAGGAGTTGATCTCTTCATTCGTGTACCGGCTGAAATAGCTGCAGTTGCAGATAATAAAAAGAAAAAAGACCTCAACAAGAGTTTTATAATCATTCCTATTGTTGGAGGGATAGGAGCATTTACCTTGGTCATATGTGCTTACCTTTTGTGCAGGAAATGTTCTGCTAGACATAGAGAAAGACATCCTCAAAACTCGATTATGAGAGGACAAAATCAAATGAAATTGGATGAGCTACCACTATATGATTTCAAAAAGCTCGAAACTGCCACAAACAGTTTTCACATTGGTAATATGCTTGGGAAGGGAGGTTTTGGACCAGTATACAAGGGAATAATGGAAGATGGTCATGAAATTGCGGTGAAAAGACTCTCAAAAACATCTGGACAAGGAATAGAAGAATTCATGAATGAAGTATTAGTGATTTCAAAACTTCAACATCGAAATCTTGTGAGACTTCTTGGTTGTTGTGTTGAAAAGGGCGAGCAAATTTTGGTTTATGAGTTCATGCCAAATAAGAGTTTGGATGCCTTTCTCTTTGATCCACTACAAAAGAAAATTTTAGATTGGAGAAAGAGGTCAAGCATAATCGAAGGAATAGCTCGAGGTATACTCTATCTTCATAGAGACTCGAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGTGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGCTAAAGGTGGAGAAGATGATGAAGCTAACACAAACAGAGTTGTTGGAACATATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCTGAGAAATCAGATGTCTACAGCTTTGGGGTTTTGTTGCTGGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTTATAACCACGAGGATTCTCTTAGTCTCATAGGCTTTGCATGGAATCTATGGTTAGAAGACAACATTATATCTCTAATAGATCCAGAAGTATGGGATGCATGCCATGAGAGCAGCATGTTGAGGTGCATACAAATAGGACTACTTTGTGTGCAAGAACTTCCAAGAGAAAGACCAAATATATCAACTGTTGTTTTGATGCTCATAAGTGAGATTACACATCTTCCACCTCCAGGGAAAGTTGCATTTGTTTACAAGCAAAATCCAAGTACAAAATCTTCTCAAAAAAGTCATGAATCTAACTCAAACAACAATGTAACTCTGAGTGAAGTTCATGGCAGATAA 2475 0.3556 MASLNHNINRLFITLLIFCTFFSCYSSLNDTITSSKSLKDQQTITSNNTNFKLGFFSPINSTNRYLGIWYINETNNIWIANRDQPLKDSNGIVSIHKDGNLVILNNQNGIIIWTTNISNTSTNSTAQLNNLGNLILRDISGTPIWDSFSHPADAAVPTMRISTNKITGKKIAFVARKGDNDPSSGPFSASIERLGTPEVFIWHDKNIHWRTGPWNGRVFLGSPRMLTLYLSGWRLVLDDDETYLTYDFNDKTMFAILSLTPHGKLKLFEYKNKKVTVNITVGQNECDLYGKCGPFGNCDNSRVPICSCFEGFEPKNSVEWSLNNWTNGCVRKEGFNLKCEMLKNGSSEFKQDSFLVKQNMKVPDFIERSDGNQNKCGPDCLANCSCLAHAYDPNIGCMYWSRELVDLQIFPFGGVDLFIRVPAEIAAVADNKKKKDLNKSFIIIPIVGGIGAFTLVICAYLLCRKCSARHRERHPQNSIMRGQNQMKLDELPLYDFKKLETATNSFHIGNMLGKGGFGPVYKGIMEDGHEIAVKRLSKTSGQGIEEFMNEVLVISKLQHRNLVRLLGCCVEKGEQILVYEFMPNKSLDAFLFDPLQKKILDWRKRSSIIEGIARGILYLHRDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIAKGGEDDEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYNHEDSLSLIGFAWNLWLEDNIISLIDPEVWDACHESSMLRCIQIGLLCVQELPRERPNISTVVLMLISEITHLPPPGKVAFVYKQNPSTKSSQKSHESNSNNNVTLSEVHGR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05158 824 SMART blect_4 35 151 IPR001480 -
Trre16g05158 824 SMART serkin_6 506 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05158 824 CDD PAN_AP_plant 344 422 - -
Trre16g05158 824 Gene3D Phosphorylase Kinase; domain 1 465 581 - -
Trre16g05158 824 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
Trre16g05158 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 769 - -
Trre16g05158 824 PIRSF SRK 2 824 IPR024171 GO:0004674
Trre16g05158 824 CDD STKc_IRAK 512 778 - -
Trre16g05158 824 CDD B_lectin 35 151 IPR001480 -
Trre16g05158 824 Pfam D-mannose binding lectin 77 177 IPR001480 -
Trre16g05158 824 SUPERFAMILY Protein kinase-like (PK-like) 491 810 IPR011009 -
Trre16g05158 824 SMART ntp_6 349 421 IPR003609 -
Trre16g05158 824 Gene3D Transferase(Phosphotransferase) domain 1 582 784 - -
Trre16g05158 824 Gene3D - 23 149 IPR036426 -
Trre16g05158 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 786 - -
Trre16g05158 824 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Trre16g05158 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 66 216 IPR036426 -
Trre16g05158 824 MobiDBLite consensus disorder prediction 798 824 - -
Trre16g05158 824 ProSiteProfiles Bulb-type lectin domain profile. 29 149 IPR001480 -
Trre16g05158 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Trre16g05158 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 470 581 - -
Trre16g05158 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Trre16g05158 824 Pfam PAN-like domain 350 407 IPR003609 -
Trre16g05158 824 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05158 824 Pfam Protein tyrosine and serine/threonine kinase 507 775 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05158 Trre-Chr16 55087412 55091877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05158 435 793 Receptor kinase-like Gene Family AT4G23230 53.482 1.38e-122 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre16g05158 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05158 - - ccaj:109790907 1126.31