Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05148 ATGTTTGGTTTTGGCAGAATTGTTTCTAATGTTGCTGTCTGCCTGCGTCAAAACCTATCACTTCGTGGCGGTGTGCAAGTACGAAATATAAACATTGGAGGTGGTCTTGGAGGTGAGATTCCAGATAGCAAGCATCTTTCGTATGCTCTTCAGCATATCCACGGGATTGGCCGTGCAAAAGCTCATCACATTGTGTGTGAGCTTGGAGTTGAAAACAAATATGTGAAAGACCTAAGCAAAAGAGAACTATATTCTCTTCGTGAATTGCTATCCAAGTACTTGATTGGAAATGATTTGAAAAAGTTAGTTGAGAGAGATGTGGTAAGGTTGGTGGGTATTCAATGCTACAGAGGGATCAGGCACGCCGATGGTTTACCCTGTCGGGGACAGCGAACTCATACAAATTCTCGCACTATGAGGACTATGCGTGCAGTCATGGATGAAGAGTGCTCAATTGTTCTTCAGTTGTCTGAAAATGATCCTTTTTTTGATGAAAAGAAGAAATTACTACAATGTAAGGGGTTTGGTCCCAAGGAACGGATATATCTTAGGTGCTCCTCAGGACCTCATTGGATGAATGATGCTGTAAAGATCTTACTTCCGATTGCAAGGATCATACAATTAAATGAGCTGGAACTATATTTTGCTGAAGACGATGCCTCAGTGGAGTTTTACAGCCCCAGGAATGAGTTGGAGGCTCTCAATTCAATTGTTTTGCTCACAGACAAATTACTTTCTAGCTGTCAACATTCCCATACAAATATCCTGCAAGGGTTACGGCAAACGATTCTTGATTTAATTTCTGCTTTTGGGGACCAAAATAATCTGAAGGGAGTACTTGAAAAGTACCACAGTTGTGAGAAAGAAGAACACCTGATCGAGTGGGGTAAAAGCCATGGTGTAAAGACACAATTAAAGATAGCTTATGTTGAAGGAGCAGGCCGGGGAACTATAGCAGAGAAAGATCTAAAAGTTGGAGATATTGCTTTAGAAATTCCTGTGTCCATTATCATTTCTGAGGAGCTTGTGCTTGAAACTGAAATGTATCGTGTCTTAAAAGAGGTTGATGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAGAAGTACAACTGTGATTCAAAATTCAAAAGTTACTTTGACACACTTCCAGAAAAATTTAATACAGGATTGAGTTTTGGGATTGAAGCAATTACAATATTAGATGGAACTTTGCTGTTTGAAGAAATAATGCAAGCAAGACAGCACCTGCATGCTCAGTATGATGAGTTGTTTCCTGCTCTGTGCAATGGCTTTCCTGATATATTTCCTCCAGAGATGTACACGTGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTATTCCAATAGCATGAAGATAATGTTTTCAGATGGAGAACTGAGGACATGTTTGATCCCTCTTGCTGGTTTTCTTAATCATTCACTGTGCCCACATATTATGCACTATGGCAAAGTAGATTCTTCAACAAATTCATTGAAATTTGGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGTTACGGGAACTTCTCCAGCTCTCATTTTATTACATTTTATGGTTTCTTACCTCAAGGAGACAACCCGTATGATGTCATTCCTTTAGACATTGATAGTTCAGATATTGATTCTAACGAGGATAAACCTGTGTCCAATTGGGCGACTCACATGGTGCGTGGTACTTGGCTCTCCAACAATCACAGCATATTCTATTATGGCCTTCCCTCTCCATTATTGAATCACCTTCGGAGATCTCGAAGTCCCGTGCTGAAAACAAAGATTGTCTTGCAAGGAAACTTGGAAAATGAGCTAGAAGTACTTGGAGATCTTAAAGACATCTTTGATGACATGATGGACAATATGGGTGATATCGATCTTGATAACAGCGAAAACTACAATTGGGATGAAAAATTGGCTGTGGATTTTAAAAATCTACAAAGACGAATTGCTCATTCCATTTCAACTTCATGTGAAACTGGAGTAAGCATGTTGCAGAATGAACTGCACAAGTGTTTGGCTGAGGACATTCTAGGCTAA 2073 0.397 MFGFGRIVSNVAVCLRQNLSLRGGVQVRNINIGGGLGGEIPDSKHLSYALQHIHGIGRAKAHHIVCELGVENKYVKDLSKRELYSLRELLSKYLIGNDLKKLVERDVVRLVGIQCYRGIRHADGLPCRGQRTHTNSRTMRTMRAVMDEECSIVLQLSENDPFFDEKKKLLQCKGFGPKERIYLRCSSGPHWMNDAVKILLPIARIIQLNELELYFAEDDASVEFYSPRNELEALNSIVLLTDKLLSSCQHSHTNILQGLRQTILDLISAFGDQNNLKGVLEKYHSCEKEEHLIEWGKSHGVKTQLKIAYVEGAGRGTIAEKDLKVGDIALEIPVSIIISEELVLETEMYRVLKEVDGISSETILLLWSMKEKYNCDSKFKSYFDTLPEKFNTGLSFGIEAITILDGTLLFEEIMQARQHLHAQYDELFPALCNGFPDIFPPEMYTWEKFLWACELWYSNSMKIMFSDGELRTCLIPLAGFLNHSLCPHIMHYGKVDSSTNSLKFGLSRPCRSGEECCLSYGNFSSSHFITFYGFLPQGDNPYDVIPLDIDSSDIDSNEDKPVSNWATHMVRGTWLSNNHSIFYYGLPSPLLNHLRRSRSPVLKTKIVLQGNLENELEVLGDLKDIFDDMMDNMGDIDLDNSENYNWDEKLAVDFKNLQRRIAHSISTSCETGVSMLQNELHKCLAEDILG 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05148 690 SUPERFAMILY S13-like H2TH domain 37 143 IPR010979 GO:0003676
Trre16g05148 690 CDD SET_LSMT 305 535 - -
Trre16g05148 690 Pfam Ribosomal protein S13/S18 37 138 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre16g05148 690 Gene3D - 148 265 IPR036464 -
Trre16g05148 690 Pfam Rubisco LSMT substrate-binding 158 251 IPR015353 -
Trre16g05148 690 SUPERFAMILY SET domain 288 542 IPR046341 -
Trre16g05148 690 Gene3D set domain protein methyltransferase, domain 1 286 535 - -
Trre16g05148 690 Hamap 30S ribosomal protein S13 [rpsM]. 26 148 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre16g05148 690 FunFam Transcription factor, E2F and DP-related 287 535 - -
Trre16g05148 690 ProSitePatterns Ribosomal protein S13 signature. 117 130 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trre16g05148 690 Pfam SET domain 314 521 IPR001214 GO:0005515
Trre16g05148 690 ProSiteProfiles SET domain profile. 303 521 IPR001214 GO:0005515
Trre16g05148 690 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 287 630 - -
Trre16g05148 690 Gene3D 30s ribosomal protein s13, domain 2 103 147 IPR027437 -
Trre16g05148 690 Gene3D - 36 101 - -
Trre16g05148 690 ProSiteProfiles Ribosomal protein S13 family profile. 36 141 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05148 Trre-Chr16 55004572 55013598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05148 25 142 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.169 9.42e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre16g05148 SET 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05148 K19199 - gmx:100778605 914.835