Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05139 ATGATGAGTAGCTTTGACCCCCAAAGATGGCAACAAGATCATAGAAGACAGAAAAATATCATAGGTGCATCATCATCATCTTCAAATAATTCTTCTAATTTCTATGGCAACAATATGGGAAAGTATAAGAAACTTATGCTTGAGGATGATGATCTTGTGTCCACTGTAGTTCCTGCAGTTACAGTAGTCTTGGAGGGCCGTTCGATCGGCCAACGCATCAACCTTCATAACCATGGTAGTTACCAAAGTCTCGCCAAGGCTCTTCGCCAGATGTTTGTCGACTGCACGGACGATGACCGCGCAGCCAATGATCATCTTGATCTATCTAATGCCATTCCTGGTCATCTTATTGCCTATGAAGACATGGAGAATGATCTTCTTCTAGCTGGTGATCTTACCTGGAAAGATTTTGTACGTGTAGCAAAGAGAATAAGGATACTTCCAGCAAAGGGGAATTCAAGGAAAGGTACAACAAGTACAAGAGATGCATAA 492 0.4187 MMSSFDPQRWQQDHRRQKNIIGASSSSSNNSSNFYGNNMGKYKKLMLEDDDLVSTVVPAVTVVLEGRSIGQRINLHNHGSYQSLAKALRQMFVDCTDDDRAANDHLDLSNAIPGHLIAYEDMENDLLLAGDLTWKDFVRVAKRIRILPAKGNSRKGTTSTRDA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05139 163 Pfam AUX/IAA family 18 147 IPR033389 -
Trre16g05139 163 MobiDBLite consensus disorder prediction 17 33 - -
Trre16g05139 163 MobiDBLite consensus disorder prediction 1 33 - -
Trre16g05139 163 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 44 149 IPR003311 GO:0005634|GO:0006355
Trre16g05139 163 Gene3D - 53 160 - -
Trre16g05139 163 SUPERFAMILY CAD & PB1 domains 62 146 - -
Trre16g05139 163 ProSiteProfiles PB1 domain profile. 57 151 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05139 Trre-Chr16 54932237 54933399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05139 61 147 B3 DNA Binding Superfamily AT1G19220 30.682 6.32e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre16g05139 AUX_IAA 5.6e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05139 - - ahf:112698078 193.356