Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05134 ATGAGCACGAGCCAATTCGACGGTAACGCAGCATTCGCTGGCGGCGGATTCATGCCTTCTCAGACCACTCAGGGCGCAAACTCTCCCTTCACTTCTTCCAAGAATCGTGATAGTCAGACATTGCTTCCTTTGACGATCAAGCAGGTCAATGATGCTTTTCAGTCAAGTGATGGTTCCAATCTTACTATTGATGGTGTCGATGTTAACACCGTTACTTTTGTGGGTAGGGTGTGCAACAAAGTTGAACAAATTACTGATTATAAATTTGTACTTGATGATGGTACCGGAACGATCGAGTGCATTAGATGGCTTAATGAACTGGCAGATCCAAATGAAGGGGAGGGTATCTTGAATGGAATGTATGTGCGGCTATATGGACAATTTAAAGGTTTGCAGGGTAGAAAATGCATAAGTATTTTTTCTTTGAGGCCCGTGACTGACTTTGATGAGATTGCCAACCATTTCATTAATTGCATATATGTTCATCTATATAATTCGAGGTTACAGCGTATCCAGGCTAGCATCCCCAATCAGCAACATGCTCCCAATTCCACACAAATCACTCCCACAAAAGGTTATCAAGCTCAAGCAGTAGCAGCAAATCAAATCTCTGGTCAGCGTAATAATGGTCAGAAGACTGTTGAAGATATGGTGATTGATGTTTTGGTTGCAAACAGGGAAATTAGTGAAGGATTGCCTCGTGAAACTATTGCACAGCATCTTGGACTTCCCGTGGATAGAATCATGCTGGCTATTCATAATCTTACTCAAGAAGGTCTCGTTTATGAAGGTATAACTAATCACTATAAGTCAACTGTCGACGGTTGA 828 0.4203 MSTSQFDGNAAFAGGGFMPSQTTQGANSPFTSSKNRDSQTLLPLTIKQVNDAFQSSDGSNLTIDGVDVNTVTFVGRVCNKVEQITDYKFVLDDGTGTIECIRWLNELADPNEGEGILNGMYVRLYGQFKGLQGRKCISIFSLRPVTDFDEIANHFINCIYVHLYNSRLQRIQASIPNQQHAPNSTQITPTKGYQAQAVAANQISGQRNNGQKTVEDMVIDVLVANREISEGLPRETIAQHLGLPVDRIMLAIHNLTQEGLVYEGITNHYKSTVDG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05134 275 FunFam replication protein A 32 kDa subunit A-like 34 167 - -
Trre16g05134 275 Gene3D - 33 167 IPR012340 -
Trre16g05134 275 CDD RPA2_DBD_D 70 163 - -
Trre16g05134 275 Gene3D - 205 273 IPR036388 -
Trre16g05134 275 SUPERFAMILY Nucleic acid-binding proteins 41 166 IPR012340 -
Trre16g05134 275 SUPERFAMILY "Winged helix" DNA-binding domain 209 272 IPR036390 -
Trre16g05134 275 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre16g05134 275 MobiDBLite consensus disorder prediction 15 37 - -
Trre16g05134 275 Pfam Replication protein A C terminal 162 264 IPR014892 -
Trre16g05134 275 PANTHER REPLICATION PROTEIN A-RELATED 5 272 IPR040260 -
Trre16g05134 275 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05134 Trre-Chr16 54867951 54871059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05134 1 222 Core DNA Replication Machinery Family AT3G02920 46.222 7.33e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05134 K10739 - gmx:100782819 316.62