Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05133 ATGGACTCTTCCTCTTCTTCACCCCCCACACATACTAACAACACCTCCCTCGCTTTCTCTCTTTCTAATACCCATTTTCCTAATATTCCTTCTCACTCTTCTTCCTCTCACCTCTCTCTTTTTCACTCATTCACCACTTTTCCTCCATTAACACCACCATCTCTCACTCTCACAGGAAGCAACACCGTAGATACATCACCGGAGGCAACTGACGGAGGAACTACCAATCTCTCCATATTCACCGGCGGACATAAGTTTGAGGATTTCTTAGGAAGCTCCGTCGCAACAACAACCGCCACCACGTGTGCGCCAACACAGCTTCATCAGTTTTCCACCGACATATACGATTCGGAGCTTAAGAAAACAATATCCGCTTGCTTCCAAGGTGGTTACCCCACCGAACCAAACTCCAAACCTCGGAAACTATCTCCCAAGAAAACCGTTGATAACTTCGGCCAACGCACCTCTATCTATCGCGGCGTCACCCGGCATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGTAGAAGGGAAGGACAAAGCAGAAAAGGAAGACAAGGTACTATATATGCTAATTTAAGTGGCTATGACAAGGAAGATAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCACTCCGAAGGAAGAGCAGTGGTTTTTCAAGAGGTGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGACGATGGCAGGCAAGAATTGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACAAATTTCGACATGAGTCGCTACGACGTAAAGAGCATTGCAAATAGTTCTCTTCCAATAGGCGGTTTATCAAACAAGAACAACAAAAATTCAACAGATTCACCGGTAACAGAAATCAAAAGCCTCGAACCAATTCAATCCGATGAAAGAGATCATCCATCATCAGTTTCATCAGCAACAACCTTAAGCTTCGCGATTCCTATCAAACAAGATCCTTCTTCAGATTACTGGTCCAACATTCTCGGATTCCATAATAGTAATAATAATAATAACTCTAGTGTTGTTACTACCACACCCTTCAACATGGATTTTTCTACTCATGCACCTTCAAATACCAACAATGATAATCAAAATGCAGGGTTTTTCGGTGGATCAGGTATCTTAAATATTCATCAACAAAATGAAAATGGAAATAATGGTTCTTCATCTGCATCGGCATCTGCATCTTCTTCAACAAGTAGTTCAATTCCATATGCAACACCAATATTTTCTTTAAATAGTAATAGTAGTTATGATCAAAATGGTAATAATAATAGTTATGGAAATAATTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTGTTTCAAACACCAATATTTGGAATGGAATGA 1578 0.4138 MDSSSSSPPTHTNNTSLAFSLSNTHFPNIPSHSSSSHLSLFHSFTTFPPLTPPSLTLTGSNTVDTSPEATDGGTTNLSIFTGGHKFEDFLGSSVATTTATTCAPTQLHQFSTDIYDSELKKTISACFQGGYPTEPNSKPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGTIYANLSGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSPVTEIKSLEPIQSDERDHPSSVSSATTLSFAIPIKQDPSSDYWSNILGFHNSNNNNNSSVVTTTPFNMDFSTHAPSNTNNDNQNAGFFGGSGILNIHQQNENGNNGSSSASASASSSTSSSIPYATPIFSLNSNSSYDQNGNNNSYGNNWIGHTIFQTHAKQPSLFQTPIFGME 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05133 525 ProSiteProfiles AP2/ERF domain profile. 157 227 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 MobiDBLite consensus disorder prediction 422 467 - -
Trre16g05133 525 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 Gene3D AP2/ERF domain 263 323 IPR036955 GO:0003700|GO:0006355
Trre16g05133 525 Gene3D AP2/ERF domain 157 229 IPR036955 GO:0003700|GO:0006355
Trre16g05133 525 ProSiteProfiles AP2/ERF domain profile. 263 321 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 CDD AP2 156 229 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 SUPERFAMILY DNA-binding domain 156 229 IPR016177 GO:0003677
Trre16g05133 525 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 427 - -
Trre16g05133 525 SMART rav1_2 157 233 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 SMART rav1_2 263 327 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 FunFam AP2-like ethylene-responsive transcription factor 262 323 - -
Trre16g05133 525 FunFam AP2-like ethylene-responsive transcription factor ANT 156 229 - -
Trre16g05133 525 MobiDBLite consensus disorder prediction 55 74 - -
Trre16g05133 525 CDD AP2 262 323 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 Pfam AP2 domain 263 313 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 Pfam AP2 domain 157 219 IPR001471 GO:0003700|GO:0006355
Trre16g05133 525 SUPERFAMILY DNA-binding domain 262 323 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05133 Trre-Chr16 54853096 54857189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05133 111 525 AP2-EREBP Transcription Factor Family AT5G57390 55.011 5.91e-146 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Trre16g05133 AP2 2.6e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05133 K09285 - gmx:100803558 648.662