Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05132 ATGGACTCTTCCTCTTCTTCACCCCCCACACATACTAACAACACCTCCCTCGCTTTCTCTCTTTCTAATACCCATTTTCCTAATATTCCTTCTCACTCTTCTTCCTCTCACCTCTCTCTTTTTCACTCATTCACCACTTTTCCTCCATTAACACCACCATCTCTCACTCTCACAGGAAGCAACACCGTAGATACATCACCGGAGGCAACTGACGGAGGAACTACCAATCTCTCCATATTCACCGGCGGACATAAGTTTGAGGATTTCTTAGGAAGCTCCGTCGCAACAACAACCGCCACCACGTGTGCGCCAACACAGCTTCATCAGTTTTCCACCGACATATACGATTCGGAGCTTAAGAAAACAATATCCGCTTGCTTCCAAGGTGGTTACCCCACCGAACCAAACTCCAAACCTCGGAAACTATCTCCCAAGAAAACCGTTGATAACTTCGGCCAACGCACCTCTATCTATCGCGGCGTCACCCGGCATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGTAGAAGGGAAGGACAAAGCAGAAAAGGAAGACAAGTTTATTTGGGTGGCTATGACAAGGAAGATAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCACTCCGAAGGAAGAGCAGTGGTTTTTCAAGAGGTGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGACGATGGCAGGCAAGAATTGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACAAATTTCGACATGAGTCGCTACGACGTAAAGAGCATTGCAAATAGTTCTCTTCCAATAGGCGGTTTATCAAACAAGAACAACAAAAATTCAACAGATTCACCGGTAACAGAAATCAAAAGCCTCGAACCAATTCAATCCGATGAAAGAGATCATCCATCATCAGTTTCATCAGCAACAACCTTAAGCTTCGCGATTCCTATCAAACAAGATCCTTCTTCAGATTACTGGTCCAACATTCTCGGATTCCATAATAGTAATAATAATAATAACTCTAGTGTTGTTACTACCACACCCTTCAACATGGATTTTTCTACTCATGCACCTTCAAATACCAACAATGATAATCAAAATGCAGGGTTTTTCGGTGGATCAGGTATCTTAAATATTCATCAACAAAATGAAAATGGAAATAATGGTTCTTCATCTGCATCGGCATCTGCATCTTCTTCAACAAGTAGTTCAATTCCATATGCAACACCAATATTTTCTTTAAATAGTAATAGTAGTTATGATCAAAATGGTAATAATAATAGTTATGGAAATAATTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTGTTTCAAACACCAATATTTGGAATGGAATGA 1566 0.4157 MDSSSSSPPTHTNNTSLAFSLSNTHFPNIPSHSSSSHLSLFHSFTTFPPLTPPSLTLTGSNTVDTSPEATDGGTTNLSIFTGGHKFEDFLGSSVATTTATTCAPTQLHQFSTDIYDSELKKTISACFQGGYPTEPNSKPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSPVTEIKSLEPIQSDERDHPSSVSSATTLSFAIPIKQDPSSDYWSNILGFHNSNNNNNSSVVTTTPFNMDFSTHAPSNTNNDNQNAGFFGGSGILNIHQQNENGNNGSSSASASASSSTSSSIPYATPIFSLNSNSSYDQNGNNNSYGNNWIGHTIFQTHAKQPSLFQTPIFGME 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05132 521 ProSiteProfiles AP2/ERF domain profile. 157 223 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 SMART rav1_2 157 229 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 SMART rav1_2 259 323 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 MobiDBLite consensus disorder prediction 418 463 - -
Trre16g05132 521 FunFam AP2-like ethylene-responsive transcription factor ANT 156 225 - -
Trre16g05132 521 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 PRINTS Ethylene responsive element binding protein signature 299 319 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 FunFam AP2-like ethylene-responsive transcription factor 258 319 - -
Trre16g05132 521 ProSiteProfiles AP2/ERF domain profile. 259 317 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 Gene3D AP2/ERF domain 157 225 IPR036955 GO:0003700|GO:0006355
Trre16g05132 521 Gene3D AP2/ERF domain 259 319 IPR036955 GO:0003700|GO:0006355
Trre16g05132 521 MobiDBLite consensus disorder prediction 55 74 - -
Trre16g05132 521 Pfam AP2 domain 259 309 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 Pfam AP2 domain 157 215 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 SUPERFAMILY DNA-binding domain 156 225 IPR016177 GO:0003677
Trre16g05132 521 CDD AP2 258 319 IPR001471 GO:0003700|GO:0006355
Trre16g05132 521 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 423 - -
Trre16g05132 521 SUPERFAMILY DNA-binding domain 258 319 IPR016177 GO:0003677
Trre16g05132 521 CDD AP2 156 225 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05132 Trre-Chr16 54853096 54857189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05132 111 521 AP2-EREBP Transcription Factor Family AT5G57390 55.955 7.07e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g05132 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05132 K09285 - gmx:100803558 661.373