Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05131 ATGGACTCTTCCTCTTCTTCACCCCCCACACATACTAACAACACCTCCCTCGCTTTCTCTCTTTCTAATACCCATTTTCCTAATATTCCTTCTCACTCTTCTTCCTCTCACCTCTCTCTTTTTCACTCATTCACCACTTTTCCTCCATTAACACCACCATCTCTCACTCTCACAGGAAGCAACACCGTAGATACATCACCGGAGGCAACTGACGGAGGAACTACCAATCTCTCCATATTCACCGGCGGACATAAGTTTGAGGATTTCTTAGGAAGCTCCGTCGCAACAACAACCGCCACCACGTGTGCGCCAACACAGCTTCATCAGTTTTCCACCGACATATACGATTCGGAGCTTAAGAAAACAATATCCGCTTGCTTCCAAGGTGGTTACCCCACCGAACCAAACTCCAAACCTCGGAAACTATCTCCCAAGAAAACCGTTGATAACTTCGGCCAACGCACCTCTATCTATCGCGGCGTCACCCGGCATAGATGGACCGGGAGATATGAAGCACATCTATGGGACAATAGTTGTAGAAGGGAAGGACAAAGCAGAAAAGGAAGACAAGGTGGCTATGACAAGGAAGATAAAGCAGCTAGAGCTTATGATCTTGCTGCTCTCAAGTACTGGGGTCCAACCACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTTGATGACATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCACTCCGAAGGAAGAGCAGTGGTTTTTCAAGAGGTGCATCAATTTACAGAGGAGTAACAAGACACCATCAGCATGGACGATGGCAGGCAAGAATTGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACACAAGAAGAAGCTGCAGAAGCATATGATATAGCAGCAATCAAATTCAGAGGACTAAATGCAGTGACAAATTTCGACATGAGTCGCTACGACGTAAAGAGCATTGCAAATAGTTCTCTTCCAATAGGCGGTTTATCAAACAAGAACAACAAAAATTCAACAGATTCACCGGTAACAGAAATCAAAAGCCTCGAACCAATTCAATCCGATGAAAGAGATCATCCATCATCAGTTTCATCAGCAACAACCTTAAGCTTCGCGATTCCTATCAAACAAGATCCTTCTTCAGATTACTGGTCCAACATTCTCGGATTCCATAATAGTAATAATAATAATAACTCTAGTGTTGTTACTACCACACCCTTCAACATGGATTTTTCTACTCATGCACCTTCAAATACCAACAATGATAATCAAAATGCAGGGTTTTTCGGTGGATCAGGTATCTTAAATATTCATCAACAAAATGAAAATGGAAATAATGGTTCTTCATCTGCATCGGCATCTGCATCTTCTTCAACAAGTAGTTCAATTCCATATGCAACACCAATATTTTCTTTAAATAGTAATAGTAGTTATGATCAAAATGGTAATAATAATAGTTATGGAAATAATTGGATTGGACACACAATATTCCAAACACATGCAAAACAACCAAGTCTGTTTCAAACACCAATATTTGGAATGGAATGA 1557 0.4168 MDSSSSSPPTHTNNTSLAFSLSNTHFPNIPSHSSSSHLSLFHSFTTFPPLTPPSLTLTGSNTVDTSPEATDGGTTNLSIFTGGHKFEDFLGSSVATTTATTCAPTQLHQFSTDIYDSELKKTISACFQGGYPTEPNSKPRKLSPKKTVDNFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELDDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSNKNNKNSTDSPVTEIKSLEPIQSDERDHPSSVSSATTLSFAIPIKQDPSSDYWSNILGFHNSNNNNNSSVVTTTPFNMDFSTHAPSNTNNDNQNAGFFGGSGILNIHQQNENGNNGSSSASASASSSTSSSIPYATPIFSLNSNSSYDQNGNNNSYGNNWIGHTIFQTHAKQPSLFQTPIFGME 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05131 518 CDD AP2 156 222 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 ProSiteProfiles AP2/ERF domain profile. 256 314 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 Pfam AP2 domain 256 306 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 Pfam AP2 domain 157 212 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 Gene3D AP2/ERF domain 256 316 IPR036955 GO:0003700|GO:0006355
Trre16g05131 518 Gene3D AP2/ERF domain 157 222 IPR036955 GO:0003700|GO:0006355
Trre16g05131 518 MobiDBLite consensus disorder prediction 415 460 - -
Trre16g05131 518 FunFam AP2-like ethylene-responsive transcription factor 255 316 - -
Trre16g05131 518 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 PRINTS Ethylene responsive element binding protein signature 296 316 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 MobiDBLite consensus disorder prediction 55 74 - -
Trre16g05131 518 SMART rav1_2 256 320 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 SMART rav1_2 157 226 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 SUPERFAMILY DNA-binding domain 255 316 IPR016177 GO:0003677
Trre16g05131 518 ProSiteProfiles AP2/ERF domain profile. 157 220 IPR001471 GO:0003700|GO:0006355
Trre16g05131 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 420 - -
Trre16g05131 518 FunFam AP2-like ethylene-responsive transcription factor ANT 156 222 - -
Trre16g05131 518 SUPERFAMILY DNA-binding domain 156 222 IPR016177 GO:0003677
Trre16g05131 518 CDD AP2 255 316 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05131 Trre-Chr16 54853096 54857189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05131 111 518 AP2-EREBP Transcription Factor Family AT5G57390 55.281 2.56e-146 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Trre16g05131 AP2 6.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05131 K09285 - gmx:100803558 650.203