Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05128 ATGAGGTATATTAGGACAAACAGCTTCAAGGGACTCTTCTCATTCAAAAAACGTGGTTTACGGGAACAAGAAATTAATTCTAGAGATGAAGAAAAAGATAACAGCTTGAAGATTCTTCCATATGAAGAAGAATCTTGTCAAAGACCAACTTGGAAATGTTTCTCTTATGAAGAGTTGTTTGAAGCCACCAATGGCTTCATCTCAGAAAATATTGTTGGAAAAGGAGGGTATGCAGAAGTTTACAAAGGAATGTTGAAAAATGGTGAAGAAATTGCTGTGAAGAGATTAACAAGAACTTCAAAAGATGAAAGAAAAGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGACATGTTCGTCATTCCAATGTATTGTCTCTCCGAGGATGTTGTATTGACAATGGACTTTACTTTGTTTTTGAACTATCAACAACTGGTTCTGTTTCATCTATTCTTCATGATGAAAAGTTGGATCCTTTAGATTGGAAAACAAGACATAAAATAGTTCTTGGGACAGCGCGTGGACTTCACTACTTGCACAAAGGTTGCAAAAGGAGAATAATCCATAGAGATATCAAGGCATCAAACATTTTGTTGACAAAAGATTTTGAACCACAGATATCTGATTTTGGACTAGCAAAATGGCTACCATCTCAATGGACTCATCATTCAATTGCTCCAATAGAAGGGACATTTGGACATTTGGCACCAGAATACTACTTGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCTTTTGGTGTGTTTTTGCTAGAAGTCATTTCTGGTAGGAAACCTGTTGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGCTGGTAGATGCAAGGCTTGAAGGAGCCTATGATGTGACACAGTTAATGAGATTTGCCTTTGCTGCTTCTCTTTGTATTCGGGCATCTTCCACTTGGCGACCTAACATGACTGAGATATTGGAAATAATGGAGGAGGGAGAGATGGATAAAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAACAAGAGGAAGAATTTTGGGGTTTTGAAGATCTAGAATATGAATATGACACTTCCTTTTCAATGTCTTTAATTGATTCAATTGAAAGTAATTAG 1146 0.3717 MRYIRTNSFKGLFSFKKRGLREQEINSRDEEKDNSLKILPYEEESCQRPTWKCFSYEELFEATNGFISENIVGKGGYAEVYKGMLKNGEEIAVKRLTRTSKDERKEKEFLTEIGTIGHVRHSNVLSLRGCCIDNGLYFVFELSTTGSVSSILHDEKLDPLDWKTRHKIVLGTARGLHYLHKGCKRRIIHRDIKASNILLTKDFEPQISDFGLAKWLPSQWTHHSIAPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDARLEGAYDVTQLMRFAFAASLCIRASSTWRPNMTEILEIMEEGEMDKEKWKMPEEEEEQEEEFWGFEDLEYEYDTSFSMSLIDSIESN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05128 381 ProSiteProfiles Protein kinase domain profile. 66 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05128 381 FunFam Putative receptor-like serine/threonine-protein kinase 33 142 - -
Trre16g05128 381 PANTHER OS08G0249100 PROTEIN 26 363 IPR046958 -
Trre16g05128 381 Pfam Protein tyrosine and serine/threonine kinase 70 330 IPR001245 GO:0004672|GO:0006468
Trre16g05128 381 Gene3D Phosphorylase Kinase; domain 1 37 141 - -
Trre16g05128 381 FunFam Putative receptor-like serine/threonine-protein kinase 144 358 - -
Trre16g05128 381 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Trre16g05128 381 SUPERFAMILY Protein kinase-like (PK-like) 43 333 IPR011009 -
Trre16g05128 381 Gene3D Transferase(Phosphotransferase) domain 1 144 359 - -
Trre16g05128 381 SMART serkin_6 66 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g05128 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05128 Trre-Chr16 54821492 54826657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05128 52 344 Receptor kinase-like Gene Family AT1G60800 43.522 1.75e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre16g05128 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05128 - - gmx:100305398 627.861