Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05112 ATGGAGTCACAACAAAATAAAAGAAGACGTGTTTACTCTATGGAACCAAACAAAATAGTGCAATCTATATTTGCTAGAAACTATTTAAGTTATTTAGTTACAGCATTGATGAAGATAAAGGAAAATACTAGTTCTACAAATGATATCAGCAAAATTGTTAAGTATGAAGTGGACATGGCAATGGTTTTGTCAGCACAAGGTTTTGCATGGAGTAATGGCCTTAAAGTGAAGCTTCAAAGGGAACATGTCAACAATGTGGCTACAACTAGTACCATTTTGGGAATGGAAAAGGATATAGTTAGAGAAGATAATGAAGATGATGACAAGAAGATGAAGAATTTGATAAGTTTGATACCTGGTGGAGAAGAGATTTGTGATGAACAAGTTGTTAATGAATTAGAAAGTTATATAAAATGTTTGCAAATGCAGGTGAATGTTCTTCAATGCCTGCTTGCAGAAACATGTTGA 468 0.3333 MESQQNKRRRVYSMEPNKIVQSIFARNYLSYLVTALMKIKENTSSTNDISKIVKYEVDMAMVLSAQGFAWSNGLKVKLQREHVNNVATTSTILGMEKDIVREDNEDDDKKMKNLISLIPGGEEICDEQVVNELESYIKCLQMQVNVLQCLLAETC 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05112 155 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 22 151 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05112 Trre-Chr16 54697835 54698302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05112 6 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 37.179 3.20e-27 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05112 - - cam:101501101 208.379