Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05101 ATGTCTTCTGTTGAAGAGAAAAGGAAGGAAGGAAAAAAGCTGCAAAAAAGCTACTTTGATGTGGTTGGTTTATGTTGTTCTTCAGAGGTACCTCTGATTGAAAACATCCTCAAACCTCTCCAAGGAATCAAAGAGGTTTCTGTCATCGTACCATCAAGAACTGTCATCGTTGTTCATGACACAAATCTCATTTCTCAACTCCAAATTGTTAAGGCATTGAATCAAGCAAGACTAGAGGCAAATATTAGAGTATATGGAGATGAAAAACACAAAAAGAAATGGCCAAGTATTTACTCAATTGCTTCTGGATTATTACTTGCACTTTCATTTCTCAAATTTGTGTATCCACCTTTGAAATATGTTGCTCTTGGAGCTGTTGCTGCCGGTGCCGTTCCGATCATCTTGAAAGCTATTGTGTCCATTCAGAATGTTAGATTTGACATTAACATTCTTGTCATCATTGCAGTTATTGGGACAATTGCTATGGAAGATTATTTAGAAGCAGGCACCATTGTTTTCCTCTTCTCAATTGCAGAATGGTTAGAGTCAAGGGCTAGCCACAAGGCAAATGCAGTGATGTCGTCGTTGATGAGTATTACTCCGCAAAAAGCAGTGATAGCTGAAACAGGAGAGGTTGTAGATGTTGATGAGGTGAAAATAAGCACAATATTAGCAGTTAAAGCAGGAGAGGTTATACCTATTGATGGAGTCGTTTTAGATGGTAACTGCGAAGTTGACGAGAAAACACTGACCGGGGAATCATTCCCTGTAGCCAAACAAAAAGACTCTACTGTATGGGCTGGCACAATCAATCTAAATGGTTATATTAGTGTGAAGACTACTGCATTAGCTGAAGATTGTGTGGTGGCTAAAATGGCAAAATTAGTTGAAGAAGCTCAAAACAGCAAAACCAGCACTCAGAGATTGATAGACAAGTTTGCCAAGTTTTATACTCCAGCTGTTGTAGTGATATCAACTCTTGTAGCAGTGGTTCCAATTGCATTAAAAGTACATAATGAAAAATATTGGCTTCACTTTGCACTAGTTGTTTTAGTAAGTGCATGTCCATGTGCACTTGTACTTTCAACACCAGTTGCAACTTTTTGTGCTTATACAAAAGCAGCTACTTCTGGTCTTCTCATCAAAGGGGGTGATTCTCTTGAAACACTTGCAAAAATTAAAATTATGGCTTTTGACAAAACTGGTACTATAACAAAGGGTGAATTTGTGGTCACAAATTTTCAGTCTCTTTCAGATGACATTGATTTGAACACATTAATTTACTGGGTGTCAAGTATTGAGAGCAAGTCAAGCCATCCATTGGCCGAAGCAATTATTGATCACGGAAGGTCTCTCTCCATTGAACCAAATCCGGAAAAGGTGACAGATTTTGAAAATTTCCCTGGAGAAGGAATCTGTGGTAAAATTGATGACAGAGTTCTCTACATTGGAAACAAAAAAATCGCCACAAGAGCAGGGTCTGAAACCGTTGTTCCGAGCTTAGAAGGCGATGTTCATGGAGGAAAGACTATTGGCTACATATACTCAGGATCAACCCCAGTTGGAATTTTCTCTCTATCTGATGCGTGTCGATCAGGGGTTCAGGAGGCAATAAGGAAGCTAAAGTTGATGGGAATCAAAACCGCAATGCTCACCGGAGATTGCCAATCAGCTGCAATGCAAGCACAGGAACAGTTAGGTAATGCCCTGGAGGTAGTCCATGCAGAACTGTTACCGGAGGGGAAGGTAAAAATCATCTCGGAATTTAAAAGGGAAGGCCCAACAGCCATGCTAGGAGATGGTATCAATGATGCGCCGGCATTAGCTTTAGCTGATATTGGAATATCGATGGGAATTTCAGGTTCGGCATTAGCAACCGAAACTGGAGACATCATTCTTATGTCGAATGACCTCAGAAAAATCCCAGAAGCAATTAAGCTTGCTCGGAAATCTAGAAGGAAGGTGATAGAGAACATTATATTGTCCGTGGTCACTAAGGTTGCAATCCTTGCCTTGGCAATTGCTGGTCACCCGATTGTTTGGGCAGCAGTTCTTGCTGATGTTGGAACATGTCTGTTGGTCATCTTAAACAGCATGTTACTTTTGCGAAAAAGTCACAAACATGACGGAAAAAGTTGTAAATCATCCGCTCAACATCATGTCCACAAACATGGATGTGGTGACACTAACAGCGGATCCTCTCATCATCATCATCATCATCATGATCAACATCACCATCACCATCAGCATCCGCATCAACATCAACATCATAGTCATAAGAATTGTTGCTCAGAAAAGGTCGTGCCCAAGAAGTGTGCCTCCCAGCCATGTTCCTCAAAGAATCCACCCTGCACTTCAAATCCAAGTTTAAGTGGAAATGTTGATCATCTCAAAAACATGGAGAATCATGATCAATGTAAAGGAAGTGATGAATTACATGAATCAGATCACTGTCATCATGGAAGATGTGACAATAATCAAGATGTAGTCCACAAGCATGATATTGAAAACAAGTGTTGTTCAGATTCACACAATGTGGCTCTAAATGTCGAAGATACTGTTGCAGCTTCGGTACACAGTCATGGCAATTGTTTAGCACATAAGTCCCATGGAGAAAAACACTGCCACAACCAAGATATTGACATGGTTACTCGTGATAGCACTTCACTTGGTTCTCCGTGTCATCTCCATTCCTGTGACGAAAAAGAAAGCCAACAATTTACTAAGCATTGCCACTCGAACCATATTCACGACCATGGAACCATTCATGACATTCATCACAAAAAATCAGGTTGTCATTCTGATTTTAAGGAGCACGAGACAGATGAAATATCCATCGACATCATAACTGAGCACATTGAATCATCCTCGAAGCACGGCTGTTCAAGTTTGTCAGACAAACAAAAAGATTCCTGTAAAGACTGCTCCAAACCATGTGAGATTTTGCCTGTTGAGTGTGGTAGCTGTGAGGTTTTGAATGAGAAAGAAATTAGTTCATGTTGCAAGAATGATTGTTCTTCAAAGGAATCGATCGAATCATCAATTATGCATGCTTGTATTAGTTTTGACAAGAGAGAAGTTGGTGGATGTTGCAAGAGTTACATGAAGGAATGTTGTGGCAGGCATAGACATTCAGGAGCTGGTAGTTTTGTAGGAGGTTTATCAGAAATAGTTACAGAATAG 3183 0.4028 MSSVEEKRKEGKKLQKSYFDVVGLCCSSEVPLIENILKPLQGIKEVSVIVPSRTVIVVHDTNLISQLQIVKALNQARLEANIRVYGDEKHKKKWPSIYSIASGLLLALSFLKFVYPPLKYVALGAVAAGAVPIILKAIVSIQNVRFDINILVIIAVIGTIAMEDYLEAGTIVFLFSIAEWLESRASHKANAVMSSLMSITPQKAVIAETGEVVDVDEVKISTILAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGYISVKTTALAEDCVVAKMAKLVEEAQNSKTSTQRLIDKFAKFYTPAVVVISTLVAVVPIALKVHNEKYWLHFALVVLVSACPCALVLSTPVATFCAYTKAATSGLLIKGGDSLETLAKIKIMAFDKTGTITKGEFVVTNFQSLSDDIDLNTLIYWVSSIESKSSHPLAEAIIDHGRSLSIEPNPEKVTDFENFPGEGICGKIDDRVLYIGNKKIATRAGSETVVPSLEGDVHGGKTIGYIYSGSTPVGIFSLSDACRSGVQEAIRKLKLMGIKTAMLTGDCQSAAMQAQEQLGNALEVVHAELLPEGKVKIISEFKREGPTAMLGDGINDAPALALADIGISMGISGSALATETGDIILMSNDLRKIPEAIKLARKSRRKVIENIILSVVTKVAILALAIAGHPIVWAAVLADVGTCLLVILNSMLLLRKSHKHDGKSCKSSAQHHVHKHGCGDTNSGSSHHHHHHHDQHHHHHQHPHQHQHHSHKNCCSEKVVPKKCASQPCSSKNPPCTSNPSLSGNVDHLKNMENHDQCKGSDELHESDHCHHGRCDNNQDVVHKHDIENKCCSDSHNVALNVEDTVAASVHSHGNCLAHKSHGEKHCHNQDIDMVTRDSTSLGSPCHLHSCDEKESQQFTKHCHSNHIHDHGTIHDIHHKKSGCHSDFKEHETDEISIDIITEHIESSSKHGCSSLSDKQKDSCKDCSKPCEILPVECGSCEVLNEKEISSCCKNDCSSKESIESSIMHACISFDKREVGGCCKSYMKECCGRHRHSGAGSFVGGLSEIVTE 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05101 1060 Gene3D - 186 300 - -
Trre16g05101 1060 CDD P-type_ATPase_HM 100 700 - -
Trre16g05101 1060 SFLD C1.7: P-type atpase like 380 650 - -
Trre16g05101 1060 FunFam Putative cadmium/zinc-transporting ATPase 3 408 530 - -
Trre16g05101 1060 Pfam haloacid dehalogenase-like hydrolase 393 612 - -
Trre16g05101 1060 FunFam Copper-transporting ATPase 1, putative 186 300 - -
Trre16g05101 1060 FunFam Putative cadmium/zinc-transporting ATPase 3 11 84 - -
Trre16g05101 1060 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 10 704 - -
Trre16g05101 1060 SUPERFAMILY Calcium ATPase, transduction domain A 211 296 IPR008250 -
Trre16g05101 1060 Gene3D - 11 84 - -
Trre16g05101 1060 MobiDBLite consensus disorder prediction 736 757 - -
Trre16g05101 1060 SUPERFAMILY HMA, heavy metal-associated domain 13 81 IPR036163 GO:0046872
Trre16g05101 1060 NCBIfam cadmium family heavy metal-translocating P-type ATPase 148 488 - -
Trre16g05101 1060 MobiDBLite consensus disorder prediction 709 760 - -
Trre16g05101 1060 Pfam E1-E2 ATPase 207 375 - -
Trre16g05101 1060 MobiDBLite consensus disorder prediction 709 735 - -
Trre16g05101 1060 SFLD p-type atpase 380 650 IPR044492 -
Trre16g05101 1060 SUPERFAMILY HAD-like 397 699 IPR036412 -
Trre16g05101 1060 PRINTS H+-transporting ATPase (proton pump) signature 598 614 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g05101 1060 PRINTS H+-transporting ATPase (proton pump) signature 630 655 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g05101 1060 NCBIfam heavy metal translocating P-type ATPase 148 701 IPR027256 GO:0006812|GO:0016020|GO:0019829
Trre16g05101 1060 ProSitePatterns E1-E2 ATPases phosphorylation site. 399 405 IPR018303 -
Trre16g05101 1060 ProSiteProfiles Heavy-metal-associated domain profile. 15 81 IPR006121 GO:0046872
Trre16g05101 1060 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 391 IPR023298 -
Trre16g05101 1060 Gene3D - 408 530 IPR023299 GO:0000166
Trre16g05101 1060 NCBIfam HAD-IC family P-type ATPase 171 418 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g05101 1060 NCBIfam HAD-IC family P-type ATPase 513 676 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre16g05101 1060 Gene3D - 388 649 IPR023214 -
Trre16g05101 1060 PRINTS P-type cation-transporting ATPase superfamily signature 622 634 - -
Trre16g05101 1060 PRINTS P-type cation-transporting ATPase superfamily signature 544 554 - -
Trre16g05101 1060 PRINTS P-type cation-transporting ATPase superfamily signature 598 617 - -
Trre16g05101 1060 PRINTS P-type cation-transporting ATPase superfamily signature 522 533 - -
Trre16g05101 1060 PRINTS P-type cation-transporting ATPase superfamily signature 397 411 - -
Trre16g05101 1060 PRINTS P-type cation-transporting ATPase superfamily signature 246 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05101 Trre-Chr16 54601107 54615672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05101 12 1060 Primary Pumps ATPases AT4G30110 53.709 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05101 K01534 - gmx:100817567 1479.92