Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g05090 ATGGTGAAATCCCTAGAATTGAACGATGACGATGATGATTTCGACGCCGAATCGATTCTCGATGAGGAAATTGAAGAAGGAATTGATAGTATCATGGGAGGGAGAATTGAACAAGATGAATCTAATGTATCTTCTTTCTCTCATCATCATCCATGGATTGGTTTTGGCGGGAAATTCGATTTCCGGTTAGGGTTACAGAGAGCTGGAGTTAGAGCTCTGAGACATGTTGATGAAGGTAATTGGTGGAATTTTCCGGCGGTTGATATGCTTAAAATTTCGCCTAAAATATGCAGTGTCGGCAACAAGACGGCGGCGCCGGTGACTGAAAAGAAGAAGAAAAAGAAAGTAGTTGCGGCGGTGGTGGAGAAATCGAAGGACGAGTTGTTGAAAGAAACAGAGTTGCCAAAGTCGAAAACCAACGGTTTGTTGTTGAAATTGAATTACGACGGCGTTCGGAAAGCTTGGGATGACCGGGGTACACCGTTCGCCGACGACAGCCCTGTCTCCGATGCTCCTGGAAACGATGTCAATGCACGGTTGTCACAAATTGATTTGTTGTGGGAGAATGGAGGAGGAAGTGGTGGTGTAAGAGAAGCTAGTGTGTTACGCTACAAAGAAAAACGACGTACACGTCTCTTCTCTAAGAAGATCAGATATCAAGTGAGGAAAGTCAATGCAGATCGACGGCCAAGAATGAAGGGGCGATTTGTTAGGAGGCTGAATGCTAGCTCAAATGAACACAAATGGTGTTTGTAG 756 0.4484 MVKSLELNDDDDDFDAESILDEEIEEGIDSIMGGRIEQDESNVSSFSHHHPWIGFGGKFDFRLGLQRAGVRALRHVDEGNWWNFPAVDMLKISPKICSVGNKTAAPVTEKKKKKKVVAAVVEKSKDELLKETELPKSKTNGLLLKLNYDGVRKAWDDRGTPFADDSPVSDAPGNDVNARLSQIDLLWENGGGSGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRLNASSNEHKWCL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g05090 251 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 11 241 - -
Trre16g05090 251 ProSiteProfiles CCT domain profile. 197 239 IPR010402 GO:0005515
Trre16g05090 251 Pfam CCT motif 197 238 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g05090 Trre-Chr16 54498694 54501138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g05090 136 239 C2C2-CO-like Transcription Factor Family AT1G73870 47.863 8.72e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g05090 CCT 3.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g05090 - - aprc:113845796 295.434